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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus
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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus

BMC genomics, 2024-05, Vol.25 (1), p.433-433 [Peer Reviewed Journal]

2024. The Author(s). ;COPYRIGHT 2024 BioMed Central Ltd. ;2024. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2024 ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-024-10350-x ;PMID: 38693476

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Third-Generation Sequencing: The Spearhead towards the Radical Transformation of Modern Genomics
Third-Generation Sequencing: The Spearhead towards the Radical Transformation of Modern Genomics
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Third-Generation Sequencing: The Spearhead towards the Radical Transformation of Modern Genomics

Life (Basel, Switzerland), 2021-12, Vol.12 (1), p.30 [Peer Reviewed Journal]

2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 by the authors. 2021 ;ISSN: 2075-1729 ;EISSN: 2075-1729 ;DOI: 10.3390/life12010030 ;PMID: 35054423

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3
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data
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Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

PloS one, 2020-02, Vol.15 (2), p.e0228899 [Peer Reviewed Journal]

2020 Brumfield et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2020 Brumfield et al 2020 Brumfield et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0228899 ;PMID: 32053657

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4
Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic
Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic
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Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

Genes, 2020-08, Vol.11 (8), p.949 [Peer Reviewed Journal]

COPYRIGHT 2020 MDPI AG ;2020. This work is licensed under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2020 by the authors. 2020 ;ISSN: 2073-4425 ;EISSN: 2073-4425 ;DOI: 10.3390/genes11080949 ;PMID: 32824573

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5
Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses
Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses
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Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses

BMC infectious diseases, 2020-09, Vol.20 (1), p.1-648, Article 648 [Peer Reviewed Journal]

COPYRIGHT 2020 BioMed Central Ltd. ;COPYRIGHT 2020 BioMed Central Ltd. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 1471-2334 ;EISSN: 1471-2334 ;DOI: 10.1186/s12879-020-05367-y ;PMID: 32883215

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6
Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes
Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes
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Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes

BMC genomics, 2023-05, Vol.24 (1), p.229-229, Article 229 [Peer Reviewed Journal]

2023. The Author(s). ;COPYRIGHT 2023 BioMed Central Ltd. ;2023. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2023 ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-023-09277-6 ;PMID: 37131128

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7
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
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Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

Genome medicine, 2020-06, Vol.12 (1), p.57-57, Article 57 [Peer Reviewed Journal]

COPYRIGHT 2020 BioMed Central Ltd. ;COPYRIGHT 2020 BioMed Central Ltd. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 1756-994X ;EISSN: 1756-994X ;DOI: 10.1186/s13073-020-00751-4 ;PMID: 32605661

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8
CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes
CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes
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CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes

Genome medicine, 2021-02, Vol.13 (1), p.21-21, Article 21 [Peer Reviewed Journal]

COPYRIGHT 2021 BioMed Central Ltd. ;2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1756-994X ;EISSN: 1756-994X ;DOI: 10.1186/s13073-021-00839-5 ;PMID: 33563320

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9
Amplidiff: an optimized amplicon sequencing approach to estimating lineage abundances in viral metagenomes
Amplidiff: an optimized amplicon sequencing approach to estimating lineage abundances in viral metagenomes
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Amplidiff: an optimized amplicon sequencing approach to estimating lineage abundances in viral metagenomes

BMC bioinformatics, 2024-03, Vol.25 (1), p.126-126 [Peer Reviewed Journal]

2024. The Author(s). ;COPYRIGHT 2024 BioMed Central Ltd. ;2024. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-024-05735-4 ;PMID: 38521945

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10
A single workflow for multi-species blood transcriptomics
A single workflow for multi-species blood transcriptomics
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A single workflow for multi-species blood transcriptomics

BMC genomics, 2024-03, Vol.25 (1), p.282-282 [Peer Reviewed Journal]

2024. The Author(s). ;COPYRIGHT 2024 BioMed Central Ltd. ;2024. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2024 ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-024-10208-2 ;PMID: 38493105

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11
An Amplicon-Based Application for the Whole-Genome Sequencing of GI-19 Lineage Infectious Bronchitis Virus Directly from Clinical Samples
An Amplicon-Based Application for the Whole-Genome Sequencing of GI-19 Lineage Infectious Bronchitis Virus Directly from Clinical Samples
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An Amplicon-Based Application for the Whole-Genome Sequencing of GI-19 Lineage Infectious Bronchitis Virus Directly from Clinical Samples

Viruses, 2024-04, Vol.16 (4), p.515 [Peer Reviewed Journal]

COPYRIGHT 2024 MDPI AG ;2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2024 by the authors. 2024 ;ISSN: 1999-4915 ;EISSN: 1999-4915 ;DOI: 10.3390/v16040515 ;PMID: 38675858

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12
Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing
Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing
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Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing

PloS one, 2023-04, Vol.18 (4), p.e0283219-e0283219 [Peer Reviewed Journal]

Copyright: © 2023 Pillay et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ;COPYRIGHT 2023 Public Library of Science ;2023 Pillay et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2023 Pillay et al 2023 Pillay et al ;2023 Pillay et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0283219 ;PMID: 37099540

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13
Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
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Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq

BMC genomics, 2022-04, Vol.23 (1), p.319-319, Article 319 [Peer Reviewed Journal]

2022. The Author(s). ;COPYRIGHT 2022 BioMed Central Ltd. ;2022. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022 ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-022-08541-5 ;PMID: 35459088

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14
RNA modifications detection by comparative Nanopore direct RNA sequencing
RNA modifications detection by comparative Nanopore direct RNA sequencing
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RNA modifications detection by comparative Nanopore direct RNA sequencing

Nature communications, 2021-12, Vol.12 (1), p.7198-17, Article 7198 [Peer Reviewed Journal]

2021. The Author(s). ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-021-27393-3 ;PMID: 34893601

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15
SARS-CoV-2 Whole Genome Amplification and Sequencing for Effective Population-Based Surveillance and Control of Viral Transmission
SARS-CoV-2 Whole Genome Amplification and Sequencing for Effective Population-Based Surveillance and Control of Viral Transmission
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SARS-CoV-2 Whole Genome Amplification and Sequencing for Effective Population-Based Surveillance and Control of Viral Transmission

Clinical Chemistry, 2020-11, Vol.66 (11), p.1450-1458 [Peer Reviewed Journal]

American Association for Clinical Chemistry 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com. 2020 ;American Association for Clinical Chemistry 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;COPYRIGHT 2020 American Association for Clinical Chemistry, Inc. ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;2020 American Association for Clinical Chemistry 2020 ;ISSN: 0009-9147 ;EISSN: 1530-8561 ;DOI: 10.1093/clinchem/hvaa187 ;PMID: 32715310

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16
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
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Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

Nature communications, 2020-12, Vol.11 (1), p.6272-6272, Article 6272 [Peer Reviewed Journal]

Crown 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Crown 2020 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-020-20075-6 ;PMID: 33298935

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17
Human Papillomavirus Detection by Whole-Genome Next-Generation Sequencing: Importance of Validation and Quality Assurance Procedures
Human Papillomavirus Detection by Whole-Genome Next-Generation Sequencing: Importance of Validation and Quality Assurance Procedures
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Human Papillomavirus Detection by Whole-Genome Next-Generation Sequencing: Importance of Validation and Quality Assurance Procedures

Viruses, 2021-07, Vol.13 (7), p.1323 [Peer Reviewed Journal]

2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 by the authors. 2021 ;ISSN: 1999-4915 ;EISSN: 1999-4915 ;DOI: 10.3390/v13071323 ;PMID: 34372528

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18
Sequencing SARS-CoV-2 from antigen tests
Sequencing SARS-CoV-2 from antigen tests
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Sequencing SARS-CoV-2 from antigen tests

PloS one, 2022-02, Vol.17 (2), p.e0263794-e0263794 [Peer Reviewed Journal]

COPYRIGHT 2022 Public Library of Science ;This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication: https://creativecommons.org/publicdomain/zero/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0263794 ;PMID: 35134077

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19
Comprehensive genomic analysis of the SARS-CoV-2 Omicron variant BA.2.76 in Jining City, China, 2022
Comprehensive genomic analysis of the SARS-CoV-2 Omicron variant BA.2.76 in Jining City, China, 2022
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Comprehensive genomic analysis of the SARS-CoV-2 Omicron variant BA.2.76 in Jining City, China, 2022

BMC genomics, 2024-04, Vol.25 (1), p.378-378 [Peer Reviewed Journal]

2024. The Author(s). ;COPYRIGHT 2024 BioMed Central Ltd. ;2024. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2024 ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-024-10246-w ;PMID: 38632523

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20
Algorithm for DNA sequence assembly by quantum annealing
Algorithm for DNA sequence assembly by quantum annealing
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Algorithm for DNA sequence assembly by quantum annealing

BMC bioinformatics, 2022-04, Vol.23 (1), p.122-122, Article 122 [Peer Reviewed Journal]

2022. The Author(s). ;COPYRIGHT 2022 BioMed Central Ltd. ;2022. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-022-04661-7 ;PMID: 35392798

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