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1
Newly Identified Pathogens Associated with Periodontitis: A Systematic Review
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Newly Identified Pathogens Associated with Periodontitis: A Systematic Review

Journal of dental research, 2014-09, Vol.93 (9), p.846-858 [Peer Reviewed Journal]

International & American Associations for Dental Research ;International & American Associations for Dental Research. ;International & American Associations for Dental Research 2014 International & American Associations for Dental Research ;ISSN: 0022-0345 ;EISSN: 1544-0591 ;DOI: 10.1177/0022034514542468 ;PMID: 25074492

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2
Dead cells release a 'necrosignal' that activates antibiotic survival pathways in bacterial swarms
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Dead cells release a 'necrosignal' that activates antibiotic survival pathways in bacterial swarms

Nature communications, 2020-08, Vol.11 (1), p.4157-4157, Article 4157 [Peer Reviewed Journal]

The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-020-17709-0 ;PMID: 32814767

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3
Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
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Phylogenetic distribution of three pathways for propionate production within the human gut microbiota

The ISME Journal, 2014-06, Vol.8 (6), p.1323-1335 [Peer Reviewed Journal]

Copyright Nature Publishing Group Jun 2014 ;Copyright © 2014 International Society for Microbial Ecology 2014 International Society for Microbial Ecology ;ISSN: 1751-7362 ;EISSN: 1751-7370 ;DOI: 10.1038/ismej.2014.14 ;PMID: 24553467

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4
Back to Basics--The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
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Back to Basics--The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities

PloS one, 2015-07, Vol.10 (7), p.e0132783-e0132783 [Peer Reviewed Journal]

COPYRIGHT 2015 Public Library of Science ;COPYRIGHT 2015 Public Library of Science ;2015 Albertsen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2015 Albertsen et al 2015 Albertsen et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0132783 ;PMID: 26182345

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5
SnapShot: Class 2 CRISPR-Cas Systems
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SnapShot: Class 2 CRISPR-Cas Systems

Cell, 2017-01, Vol.168 (1-2), p.328-328.e1 [Peer Reviewed Journal]

2017 ;Published by Elsevier Inc. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2016.12.038 ;PMID: 28086097

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6
Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia , and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities
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Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia , and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities

International journal of systematic and evolutionary microbiology, 2020-11, Vol.70 (11), p.5972-6016 [Peer Reviewed Journal]

ISSN: 1466-5026 ;EISSN: 1466-5034 ;DOI: 10.1099/ijsem.0.004213 ;PMID: 33151140

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7
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
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Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Nucleic acids research, 2015-02, Vol.43 (3), p.e15-e15 [Peer Reviewed Journal]

The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. 2015 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gku1196 ;PMID: 25414349

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8
Vertical mother–neonate transfer of maternal gut bacteria via breastfeeding
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Vertical mother–neonate transfer of maternal gut bacteria via breastfeeding

Environmental microbiology, 2014-09, Vol.16 (9), p.2891-2904 [Peer Reviewed Journal]

2013 Society for Applied Microbiology and John Wiley & Sons Ltd ;2013 Society for Applied Microbiology and John Wiley & Sons Ltd. ;Copyright © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd ;ISSN: 1462-2912 ;EISSN: 1462-2920 ;DOI: 10.1111/1462-2920.12238 ;PMID: 24033881

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9
A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming
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A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

Nature communications, 2020-09, Vol.11 (1), p.4717-12, Article 4717 [Peer Reviewed Journal]

The Author(s) 2020 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-020-18560-z ;PMID: 32948774

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10
DRAM for distilling microbial metabolism to automate the curation of microbiome function
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DRAM for distilling microbial metabolism to automate the curation of microbiome function

Nucleic acids research, 2020-09, Vol.48 (16), p.8883-8900 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. 2020 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkaa621 ;PMID: 32766782

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11
human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery
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human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery

The American journal of clinical nutrition, 2012-09, Vol.96 (3), p.544-551 [Peer Reviewed Journal]

2015 INIST-CNRS ;Copyright American Society for Clinical Nutrition, Inc. Sep 1, 2012 ;ISSN: 0002-9165 ;EISSN: 1938-3207 ;DOI: 10.3945/ajcn.112.037382 ;PMID: 22836031 ;CODEN: AJCNAC

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12
MGnify: the microbiome analysis resource in 2020
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Article
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MGnify: the microbiome analysis resource in 2020

Nucleic acids research, 2020-01, Vol.48 (D1), p.D570-D578 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz1035 ;PMID: 31696235

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13
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
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GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

Nucleic acids research, 2022-01, Vol.50 (D1), p.D785-D794 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab776 ;PMID: 34520557

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14
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
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Article
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DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

International journal of systematic and evolutionary microbiology, 2007-01, Vol.57 (1), p.81-91 [Peer Reviewed Journal]

2007 INIST-CNRS ;ISSN: 1466-5026 ;EISSN: 1466-5034 ;DOI: 10.1099/ijs.0.64483-0 ;PMID: 17220447

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15
Identification of bacteria in blood culture broths using matrix-assisted laser desorption-ionization Sepsityper™ and time of flight mass spectrometry
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Article
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Identification of bacteria in blood culture broths using matrix-assisted laser desorption-ionization Sepsityper™ and time of flight mass spectrometry

PloS one, 2011-08, Vol.6 (8), p.e23285-e23285 [Peer Reviewed Journal]

COPYRIGHT 2011 Public Library of Science ;COPYRIGHT 2011 Public Library of Science ;2011 Kok et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Kok et al. 2011 ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0023285 ;PMID: 21858058

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16
Where less may be more: how the rare biosphere pulls ecosystems strings
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Where less may be more: how the rare biosphere pulls ecosystems strings

The ISME Journal, 2017-04, Vol.11 (4), p.853-862 [Peer Reviewed Journal]

Copyright Nature Publishing Group Apr 2017 ;Copyright © 2017 International Society for Microbial Ecology 2017 International Society for Microbial Ecology ;Wageningen University & Research ;ISSN: 1751-7362 ;EISSN: 1751-7370 ;DOI: 10.1038/ismej.2016.174 ;PMID: 28072420

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17
List of new names and new combinations previously effectively, but not validly, published
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Article
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List of new names and new combinations previously effectively, but not validly, published

International journal of systematic and evolutionary microbiology, 2015-11, Vol.65 (11), p.3763-3767 [Peer Reviewed Journal]

ISSN: 1466-5026 ;EISSN: 1466-5034 ;DOI: 10.1099/ijsem.0.000632 ;PMID: 28056215

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18
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
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Article
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TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

Nature communications, 2019-05, Vol.10 (1), p.2182-2182, Article 2182 [Peer Reviewed Journal]

The Author(s) 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-10210-3 ;PMID: 31097708

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19
Gut Microbiota and Extreme Longevity
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Article
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Gut Microbiota and Extreme Longevity

Current biology, 2016-06, Vol.26 (11), p.1480-1485 [Peer Reviewed Journal]

2016 Elsevier Ltd ;Copyright © 2016 Elsevier Ltd. All rights reserved. ;ISSN: 0960-9822 ;EISSN: 1879-0445 ;DOI: 10.1016/j.cub.2016.04.016 ;PMID: 27185560

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20
AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential
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AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential

Nucleic acids research, 2019-07, Vol.47 (W1), p.W276-W282 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz282 ;PMID: 30997504

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