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1
tmap : Thematic Maps in R
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tmap : Thematic Maps in R

Journal of statistical software, 2018-04, Vol.84 (6), p.1-39 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v084.i06

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2
stm : An R Package for Structural Topic Models
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stm : An R Package for Structural Topic Models

Journal of statistical software, 2019-10, Vol.91 (2), p.1-40 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v091.i02

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3
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

Bioinformatics, 2019-11, Vol.36 (6), p.1925-1927 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz848 ;PMID: 31730192

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4
Fitting Linear Mixed-Effects Models Using lme4
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Fitting Linear Mixed-Effects Models Using lme4

Journal of statistical software, 2015-10, Vol.67 (1), p.1-48 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v067.i01

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5
Least-Squares Means: The R Package lsmeans
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Least-Squares Means: The R Package lsmeans

Journal of statistical software, 2016, Vol.69 (1), p.1-33 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v069.i01

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6
extRemes 2.0: An Extreme Value Analysis Package in R
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Article
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extRemes 2.0: An Extreme Value Analysis Package in R

Journal of statistical software, 2016-08, Vol.72 (8), p.1-39 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v072.i08

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7
dbscan : Fast Density-Based Clustering with R
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dbscan : Fast Density-Based Clustering with R

Journal of statistical software, 2019-10, Vol.91 (1), p.1-30 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v091.i01

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8
Various Versatile Variances: An Object-Oriented Implementation of Clustered Covariances in R
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Various Versatile Variances: An Object-Oriented Implementation of Clustered Covariances in R

Journal of statistical software, 2020-10, Vol.95 (1), p.1-36 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v095.i01

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9
Imputation with the R Package VIM
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Article
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Imputation with the R Package VIM

Journal of statistical software, 2016-10, Vol.74 (7), p.1-16 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v074.i07

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10
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
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GTDB-Tk v2: memory friendly classification with the genome taxonomy database

Bioinformatics (Oxford, England), 2022-11, Vol.38 (23), p.5315-5316 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. ;The Author(s) 2022. Published by Oxford University Press. 2022 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac672 ;PMID: 36218463

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11
SECOND: Sparsely Embedded Convolutional Detection
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SECOND: Sparsely Embedded Convolutional Detection

Sensors (Basel, Switzerland), 2018-10, Vol.18 (10), p.3337 [Peer Reviewed Journal]

2018 by the authors. 2018 ;ISSN: 1424-8220 ;EISSN: 1424-8220 ;DOI: 10.3390/s18103337 ;PMID: 30301196

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12
GraphDTA: predicting drug–target binding affinity with graph neural networks
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GraphDTA: predicting drug–target binding affinity with graph neural networks

Bioinformatics, 2021-05, Vol.37 (8), p.1140-1147 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa921

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13
lmerTest Package: Tests in Linear Mixed Effects Models
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lmerTest Package: Tests in Linear Mixed Effects Models

Journal of statistical software, 2017-12, Vol.82 (13), p.1-26 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v082.i13

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14
Bayesian Item Response Modeling in R with brms and Stan
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Bayesian Item Response Modeling in R with brms and Stan

Journal of statistical software, 2021-11, Vol.100 (5), p.1-54 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v100.i05

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15
ggtern : Ternary Diagrams Using ggplot2
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ggtern : Ternary Diagrams Using ggplot2

Journal of statistical software, 2018-12, Vol.87 (Code Snippet 3), p.1-17 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v087.c03

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16
mediation : R Package for Causal Mediation Analysis
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mediation : R Package for Causal Mediation Analysis

Journal of statistical software, 2014-08, Vol.59 (5), p.1-38 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v059.i05

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17
brms : An R Package for Bayesian Multilevel Models Using Stan
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brms : An R Package for Bayesian Multilevel Models Using Stan

Journal of statistical software, 2017, Vol.80 (1), p.1-28 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v080.i01

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18
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Bioinformatics, 2020-02, Vol.36 (4), p.1234-1240 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz682 ;PMID: 31501885

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19
runjags : An R Package Providing Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS
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runjags : An R Package Providing Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS

Journal of statistical software, 2016-07, Vol.71 (9), p.1-25 [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v071.i09

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20
cutpointr : Improved Estimation and Validation of Optimal Cutpoints in R
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cutpointr : Improved Estimation and Validation of Optimal Cutpoints in R

Journal of statistical software, 2021-06, Vol.98 (11) [Peer Reviewed Journal]

ISSN: 1548-7660 ;EISSN: 1548-7660 ;DOI: 10.18637/jss.v098.i11

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