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Material Type: Article
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Sequence-based prediction of protein protein interaction using a deep-learning algorithmBMC bioinformatics, 2017-05, Vol.18 (1), p.277-277, Article 277 [Peer Reviewed Journal]Copyright BioMed Central 2017 ;The Author(s). 2017 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-017-1700-2 ;PMID: 28545462Full text available |
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2 |
Material Type: Article
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Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problemsBMC bioinformatics, 2011-06, Vol.12 (1), p.253-253, Article 253 [Peer Reviewed Journal]COPYRIGHT 2011 BioMed Central Ltd. ;Distributed under a Creative Commons Attribution 4.0 International License ;Copyright ©2011 Lê Cao et al; licensee BioMed Central Ltd. 2011 Lê Cao et al; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-12-253 ;PMID: 21693065Full text available |
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3 |
Material Type: Article
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BLAST+: architecture and applicationsBMC bioinformatics, 2009-12, Vol.10 (1), p.421-421, Article 421 [Peer Reviewed Journal]2009 Camacho et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Copyright ©2009 Camacho et al; licensee BioMed Central Ltd. 2009 Camacho et al; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-10-421 ;PMID: 20003500Full text available |
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4 |
Material Type: Article
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Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignmentsBMC bioinformatics, 2016-02, Vol.17 (60), p.81-81, Article 81 [Peer Reviewed Journal]COPYRIGHT 2016 BioMed Central Ltd. ;Copyright BioMed Central 2016 ;Daily. 2016 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-0930-z ;PMID: 26864881Full text available |
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5 |
Material Type: Article
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3D deep convolutional neural networks for amino acid environment similarity analysisBMC bioinformatics, 2017-06, Vol.18 (1), p.302-302, Article 302 [Peer Reviewed Journal]COPYRIGHT 2017 BioMed Central Ltd. ;Copyright BioMed Central 2017 ;The Author(s). 2017 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-017-1702-0 ;PMID: 28615003Full text available |
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6 |
Material Type: Article
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Deep learning models for bacteria taxonomic classification of metagenomic dataBMC bioinformatics, 2018-07, Vol.19 (Suppl 7), p.198-198, Article 198 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2182-6 ;PMID: 30066629Full text available |
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7 |
Material Type: Article
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CellProfiler 4: improvements in speed, utility and usabilityBMC bioinformatics, 2021-09, Vol.22 (1), p.1-433, Article 433 [Peer Reviewed Journal]COPYRIGHT 2021 BioMed Central Ltd. ;2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-021-04344-9 ;PMID: 34507520Full text available |
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8 |
Material Type: Article
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Random forest versus logistic regression: a large-scale benchmark experimentBMC bioinformatics, 2018-07, Vol.19 (1), p.270-270, Article 270 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2264-5 ;PMID: 30016950Full text available |
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9 |
Material Type: Article
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Reactome pathway analysis: a high-performance in-memory approachBMC bioinformatics, 2017-03, Vol.18 (1), p.142-142, Article 142 [Peer Reviewed Journal]Copyright BioMed Central 2017 ;The Author(s). 2017 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-017-1559-2 ;PMID: 28249561Full text available |
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10 |
Material Type: Article
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PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationshipsBMC bioinformatics, 2008-07, Vol.9 (1), p.322-322, Article 322 [Peer Reviewed Journal]COPYRIGHT 2008 BioMed Central Ltd. ;Copyright © 2008 Than et al; licensee BioMed Central Ltd. 2008 Than et al; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-9-322 ;PMID: 18662388Full text available |
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11 |
Material Type: Article
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HH-suite3 for fast remote homology detection and deep protein annotationBMC bioinformatics, 2019-09, Vol.20 (1), p.473-473, Article 473 [Peer Reviewed Journal]COPYRIGHT 2019 BioMed Central Ltd. ;2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-019-3019-7 ;PMID: 31521110Full text available |
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12 |
Material Type: Article
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iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq dataBMC bioinformatics, 2018-12, Vol.19 (1), p.534-24, Article 534 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;The Author(s). 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2486-6 ;PMID: 30567491Full text available |
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13 |
Material Type: Article
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Growthcurver: an R package for obtaining interpretable metrics from microbial growth curvesBMC bioinformatics, 2016-04, Vol.17 (149), p.172-172, Article 172 [Peer Reviewed Journal]COPYRIGHT 2016 BioMed Central Ltd. ;Sprouffske and Wagner. 2016 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-1016-7 ;PMID: 27094401Full text available |
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14 |
Material Type: Article
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InteractiVenn: a web-based tool for the analysis of sets through Venn diagramsBMC bioinformatics, 2015-05, Vol.16 (1), p.169-169, Article 169 [Peer Reviewed Journal]COPYRIGHT 2015 BioMed Central Ltd. ;Heberle et al.; licensee BioMed Central. 2015 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-015-0611-3 ;PMID: 25994840Full text available |
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15 |
Material Type: Article
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Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelinesBMC bioinformatics, 2018-10, Vol.19 (Suppl 10), p.349-349, Article 349 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2296-x ;PMID: 30367595Full text available |
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16 |
Material Type: Article
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Enrichr: interactive and collaborative HTML5 gene list enrichment analysis toolBMC bioinformatics, 2013-04, Vol.14 (1), p.128-128, Article 128 [Peer Reviewed Journal]COPYRIGHT 2013 BioMed Central Ltd. ;2013 Chen et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Copyright © 2013 Chen et al.; licensee BioMed Central Ltd. 2013 Chen et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-14-128 ;PMID: 23586463Full text available |
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17 |
Material Type: Article
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Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end readsBMC bioinformatics, 2014-06, Vol.15 (1), p.182-182, Article 182 [Peer Reviewed Journal]COPYRIGHT 2014 BioMed Central Ltd. ;2014 Jiang et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. ;Copyright © 2014 Jiang et al.; licensee BioMed Central Ltd. 2014 Jiang et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-15-182 ;PMID: 24925680Full text available |
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18 |
Material Type: Article
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A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association StudiesBMC bioinformatics, 2017-02, Vol.18 (1), p.105-105, Article 105 [Peer Reviewed Journal]Copyright BioMed Central 2017 ;The Author(s). 2017 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-017-1511-5 ;PMID: 28193155Full text available |
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19 |
Material Type: Article
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variancePartition: interpreting drivers of variation in complex gene expression studiesBMC bioinformatics, 2016-11, Vol.17 (1), p.483-483, Article 483 [Peer Reviewed Journal]COPYRIGHT 2016 BioMed Central Ltd. ;Copyright BioMed Central 2016 ;The Author(s) 2016 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-1323-z ;PMID: 27884101Full text available |
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Material Type: Article
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DrImpute: imputing dropout events in single cell RNA sequencing dataBMC bioinformatics, 2018-06, Vol.19 (1), p.220-220, Article 220 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2226-y ;PMID: 29884114Full text available |