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1
Sequence-based prediction of protein protein interaction using a deep-learning algorithm
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Sequence-based prediction of protein protein interaction using a deep-learning algorithm

BMC bioinformatics, 2017-05, Vol.18 (1), p.277-277, Article 277 [Peer Reviewed Journal]

Copyright BioMed Central 2017 ;The Author(s). 2017 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-017-1700-2 ;PMID: 28545462

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2
Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems
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Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

BMC bioinformatics, 2011-06, Vol.12 (1), p.253-253, Article 253 [Peer Reviewed Journal]

COPYRIGHT 2011 BioMed Central Ltd. ;Distributed under a Creative Commons Attribution 4.0 International License ;Copyright ©2011 Lê Cao et al; licensee BioMed Central Ltd. 2011 Lê Cao et al; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-12-253 ;PMID: 21693065

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3
BLAST+: architecture and applications
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BLAST+: architecture and applications

BMC bioinformatics, 2009-12, Vol.10 (1), p.421-421, Article 421 [Peer Reviewed Journal]

2009 Camacho et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Copyright ©2009 Camacho et al; licensee BioMed Central Ltd. 2009 Camacho et al; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-10-421 ;PMID: 20003500

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4
Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments
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Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments

BMC bioinformatics, 2016-02, Vol.17 (60), p.81-81, Article 81 [Peer Reviewed Journal]

COPYRIGHT 2016 BioMed Central Ltd. ;Copyright BioMed Central 2016 ;Daily. 2016 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-0930-z ;PMID: 26864881

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5
3D deep convolutional neural networks for amino acid environment similarity analysis
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3D deep convolutional neural networks for amino acid environment similarity analysis

BMC bioinformatics, 2017-06, Vol.18 (1), p.302-302, Article 302 [Peer Reviewed Journal]

COPYRIGHT 2017 BioMed Central Ltd. ;Copyright BioMed Central 2017 ;The Author(s). 2017 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-017-1702-0 ;PMID: 28615003

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6
Deep learning models for bacteria taxonomic classification of metagenomic data
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Deep learning models for bacteria taxonomic classification of metagenomic data

BMC bioinformatics, 2018-07, Vol.19 (Suppl 7), p.198-198, Article 198 [Peer Reviewed Journal]

COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2182-6 ;PMID: 30066629

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7
CellProfiler 4: improvements in speed, utility and usability
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CellProfiler 4: improvements in speed, utility and usability

BMC bioinformatics, 2021-09, Vol.22 (1), p.1-433, Article 433 [Peer Reviewed Journal]

COPYRIGHT 2021 BioMed Central Ltd. ;2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-021-04344-9 ;PMID: 34507520

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8
Random forest versus logistic regression: a large-scale benchmark experiment
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Random forest versus logistic regression: a large-scale benchmark experiment

BMC bioinformatics, 2018-07, Vol.19 (1), p.270-270, Article 270 [Peer Reviewed Journal]

COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2264-5 ;PMID: 30016950

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9
Reactome pathway analysis: a high-performance in-memory approach
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Reactome pathway analysis: a high-performance in-memory approach

BMC bioinformatics, 2017-03, Vol.18 (1), p.142-142, Article 142 [Peer Reviewed Journal]

Copyright BioMed Central 2017 ;The Author(s). 2017 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-017-1559-2 ;PMID: 28249561

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10
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
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PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

BMC bioinformatics, 2008-07, Vol.9 (1), p.322-322, Article 322 [Peer Reviewed Journal]

COPYRIGHT 2008 BioMed Central Ltd. ;Copyright © 2008 Than et al; licensee BioMed Central Ltd. 2008 Than et al; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-9-322 ;PMID: 18662388

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11
HH-suite3 for fast remote homology detection and deep protein annotation
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HH-suite3 for fast remote homology detection and deep protein annotation

BMC bioinformatics, 2019-09, Vol.20 (1), p.473-473, Article 473 [Peer Reviewed Journal]

COPYRIGHT 2019 BioMed Central Ltd. ;2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-019-3019-7 ;PMID: 31521110

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12
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
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iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data

BMC bioinformatics, 2018-12, Vol.19 (1), p.534-24, Article 534 [Peer Reviewed Journal]

COPYRIGHT 2018 BioMed Central Ltd. ;The Author(s). 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2486-6 ;PMID: 30567491

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13
Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves
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Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves

BMC bioinformatics, 2016-04, Vol.17 (149), p.172-172, Article 172 [Peer Reviewed Journal]

COPYRIGHT 2016 BioMed Central Ltd. ;Sprouffske and Wagner. 2016 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-1016-7 ;PMID: 27094401

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14
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
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InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

BMC bioinformatics, 2015-05, Vol.16 (1), p.169-169, Article 169 [Peer Reviewed Journal]

COPYRIGHT 2015 BioMed Central Ltd. ;Heberle et al.; licensee BioMed Central. 2015 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-015-0611-3 ;PMID: 25994840

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15
Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines
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Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines

BMC bioinformatics, 2018-10, Vol.19 (Suppl 10), p.349-349, Article 349 [Peer Reviewed Journal]

COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2296-x ;PMID: 30367595

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16
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
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Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

BMC bioinformatics, 2013-04, Vol.14 (1), p.128-128, Article 128 [Peer Reviewed Journal]

COPYRIGHT 2013 BioMed Central Ltd. ;2013 Chen et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Copyright © 2013 Chen et al.; licensee BioMed Central Ltd. 2013 Chen et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-14-128 ;PMID: 23586463

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17
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
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Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

BMC bioinformatics, 2014-06, Vol.15 (1), p.182-182, Article 182 [Peer Reviewed Journal]

COPYRIGHT 2014 BioMed Central Ltd. ;2014 Jiang et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. ;Copyright © 2014 Jiang et al.; licensee BioMed Central Ltd. 2014 Jiang et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-15-182 ;PMID: 24925680

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18
A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies
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A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies

BMC bioinformatics, 2017-02, Vol.18 (1), p.105-105, Article 105 [Peer Reviewed Journal]

Copyright BioMed Central 2017 ;The Author(s). 2017 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-017-1511-5 ;PMID: 28193155

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19
variancePartition: interpreting drivers of variation in complex gene expression studies
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variancePartition: interpreting drivers of variation in complex gene expression studies

BMC bioinformatics, 2016-11, Vol.17 (1), p.483-483, Article 483 [Peer Reviewed Journal]

COPYRIGHT 2016 BioMed Central Ltd. ;Copyright BioMed Central 2016 ;The Author(s) 2016 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-1323-z ;PMID: 27884101

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20
DrImpute: imputing dropout events in single cell RNA sequencing data
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DrImpute: imputing dropout events in single cell RNA sequencing data

BMC bioinformatics, 2018-06, Vol.19 (1), p.220-220, Article 220 [Peer Reviewed Journal]

COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2226-y ;PMID: 29884114

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