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1 |
Material Type: Article
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ShinyGO: a graphical gene-set enrichment tool for animals and plantsBioinformatics, 2020-04, Vol.36 (8), p.2628-2629 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz931 ;PMID: 31882993Full text available |
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2 |
Material Type: Article
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BBKNN: fast batch alignment of single cell transcriptomesBioinformatics, 2020-02, Vol.36 (3), p.964-965 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz625 ;PMID: 31400197Full text available |
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3 |
Material Type: Article
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Trainable Weka Segmentation: a machine learning tool for microscopy pixel classificationBioinformatics (Oxford, England), 2017-08, Vol.33 (15), p.2424-2426 [Peer Reviewed Journal]The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx180 ;PMID: 28369169Full text available |
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4 |
Material Type: Article
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GenomeScope: fast reference-free genome profiling from short readsBioinformatics (Oxford, England), 2017-07, Vol.33 (14), p.2202-2204 [Peer Reviewed Journal]The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2017 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx153 ;PMID: 28369201Full text available |
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5 |
Material Type: Article
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Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte CarloBioinformatics (Oxford, England), 2017-06, Vol.33 (11), p.1630-1638 [Peer Reviewed Journal]The Author 2017. Published by Oxford University Press. ;The Author 2017. Published by Oxford University Press. 2017 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx025 ;PMID: 28108445Full text available |
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6 |
Material Type: Article
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Minimap and miniasm: fast mapping and de novo assembly for noisy long sequencesBioinformatics (Oxford, England), 2016-07, Vol.32 (14), p.2103-2110 [Peer Reviewed Journal]The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2016 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btw152 ;PMID: 27153593Full text available |
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7 |
Material Type: Article
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KMC 3: counting and manipulating k-mer statisticsBioinformatics (Oxford, England), 2017-09, Vol.33 (17), p.2759-2761 [Peer Reviewed Journal]The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx304 ;PMID: 28472236Full text available |
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8 |
Material Type: Article
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msa: an R package for multiple sequence alignmentBioinformatics (Oxford, England), 2015-12, Vol.31 (24), p.3997-3999 [Peer Reviewed Journal]The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btv494 ;PMID: 26315911Full text available |
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9 |
Material Type: Article
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PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indelsBioinformatics, 2015-08, Vol.31 (16), p.2745-2747 [Peer Reviewed Journal]The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2015 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btv195 ;PMID: 25851949Full text available |
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10 |
Material Type: Article
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ASTRAL: genome-scale coalescent-based species tree estimationBioinformatics, 2014-09, Vol.30 (17), p.i541-i548 [Peer Reviewed Journal]The Author 2014. Published by Oxford University Press. ;The Author 2014. Published by Oxford University Press. 2014 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btu462 ;PMID: 25161245Full text available |
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11 |
Material Type: Article
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Predicting protein-protein interactions through sequence-based deep learningBioinformatics, 2018-09, Vol.34 (17), p.i802-i810 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty573 ;PMID: 30423091Full text available |
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12 |
Material Type: Article
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The MaSuRCA genome assemblerBioinformatics, 2013-11, Vol.29 (21), p.2669-2677 [Peer Reviewed Journal]The Author 2013. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2013 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btt476 ;PMID: 23990416Full text available |
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13 |
Material Type: Article
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LoRDEC: accurate and efficient long read error correctionBioinformatics (Oxford, England), 2014-12, Vol.30 (24), p.3506-3514 [Peer Reviewed Journal]The Author 2014. Published by Oxford University Press. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author 2014. Published by Oxford University Press. 2014 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btu538 ;PMID: 25165095Full text available |
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14 |
Material Type: Article
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Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteomeBioinformatics, 2018-12, Vol.34 (24), p.4223-4231 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty522 ;PMID: 29947803Full text available |
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15 |
Material Type: Article
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QUAST: quality assessment tool for genome assembliesBioinformatics, 2013-04, Vol.29 (8), p.1072-1075 [Peer Reviewed Journal]The Author 2013. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2013 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btt086 ;PMID: 23422339Full text available |
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16 |
Material Type: Article
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Quartet inference from SNP data under the coalescent modelBioinformatics, 2014-12, Vol.30 (23), p.3317-3324 [Peer Reviewed Journal]The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2014 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btu530 ;PMID: 25104814Full text available |
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17 |
Material Type: Article
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SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiationBioinformatics (Oxford, England), 2017-08, Vol.33 (15), p.2314-2321 [Peer Reviewed Journal]The Author(s) 2017. Published by Oxford University Press. ;The Author 2017. Published by Oxford University Press. 2017 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx194 ;PMID: 28379368Full text available |
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18 |
Material Type: Article
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CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico dataBioinformatics, 2013-03, Vol.29 (5), p.661-663 [Peer Reviewed Journal]The Author 2013. Published by Oxford University Press. 2013 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btt019 ;PMID: 23325622Full text available |
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19 |
Material Type: Article
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TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasetsBioinformatics (Oxford, England), 2015-11, Vol.31 (22), p.3593-3599 [Peer Reviewed Journal]The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2015 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btv422 ;PMID: 26206304Full text available |
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20 |
Material Type: Article
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RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence dataBioinformatics, 2016-05, Vol.32 (9), p.1423-1426 [Peer Reviewed Journal]The Author 2016. Published by Oxford University Press. ;The Author 2016. Published by Oxford University Press. 2016 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btw079 ;PMID: 27153000Full text available |