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1
OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
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OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

Nucleic acids research, 2013-07, Vol.41 (Web Server issue), p.W575-W581 [Peer Reviewed Journal]

The Author(s) 2013. Published by Oxford University Press. 2013 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkt289 ;PMID: 23609545

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2
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
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Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus

Cell, 2018-07, Vol.174 (3), p.744-757.e24 [Peer Reviewed Journal]

2018 Elsevier Inc. ;Copyright © 2018 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2018.05.024 ;PMID: 29887377

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3
From genome-wide associations to candidate causal variants by statistical fine-mapping
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From genome-wide associations to candidate causal variants by statistical fine-mapping

Nature reviews. Genetics, 2018-08, Vol.19 (8), p.491-504 [Peer Reviewed Journal]

COPYRIGHT 2018 Nature Publishing Group ;Copyright Nature Publishing Group Aug 2018 ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/s41576-018-0016-z ;PMID: 29844615

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4
Heatmapper: web-enabled heat mapping for all
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Heatmapper: web-enabled heat mapping for all

Nucleic acids research, 2016-07, Vol.44 (W1), p.W147-W153 [Peer Reviewed Journal]

The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkw419 ;PMID: 27190236

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5
Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
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Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution

Nature genetics, 2020-05, Vol.52 (5), p.516-524 [Peer Reviewed Journal]

COPYRIGHT 2020 Nature Publishing Group ;COPYRIGHT 2020 Nature Publishing Group ;Copyright Nature Publishing Group May 2020 ;The Author(s) 2020 ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/s41588-020-0607-4 ;PMID: 32284579

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6
Functional mapping and annotation of genetic associations with FUMA
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Functional mapping and annotation of genetic associations with FUMA

Nature communications, 2017-11, Vol.8 (1), p.1826-11, Article 1826 [Peer Reviewed Journal]

2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2017 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-017-01261-5 ;PMID: 29184056

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7
Epistasis and quantitative traits: using model organisms to study gene-gene interactions
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Epistasis and quantitative traits: using model organisms to study gene-gene interactions

Nature reviews. Genetics, 2014-01, Vol.15 (1), p.22-33 [Peer Reviewed Journal]

COPYRIGHT 2014 Nature Publishing Group ;COPYRIGHT 2014 Nature Publishing Group ;Copyright Nature Publishing Group Jan 2014 ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/nrg3627 ;PMID: 24296533

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8
Multi-platform discovery of haplotype-resolved structural variation in human genomes
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Multi-platform discovery of haplotype-resolved structural variation in human genomes

Nature communications, 2019-04, Vol.10 (1), p.1784-16, Article 1784 [Peer Reviewed Journal]

The Author(s) 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-08148-z ;PMID: 30992455

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9
Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics
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Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics

Nature communications, 2018-05, Vol.9 (1), p.1825-20, Article 1825 [Peer Reviewed Journal]

2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess © The Author(s) 2018. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. http://creativecommons.org/licenses/by/4.0/ ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-03621-1 ;PMID: 29739930

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10
Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells
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Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells

Nature biotechnology, 2016-08, Vol.34 (8), p.863-868 [Peer Reviewed Journal]

ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/nbt.3609 ;PMID: 27272384

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11
Genetic variation and the de novo assembly of human genomes
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Genetic variation and the de novo assembly of human genomes

Nature reviews. Genetics, 2015-11, Vol.16 (11), p.627-640 [Peer Reviewed Journal]

COPYRIGHT 2015 Nature Publishing Group ;COPYRIGHT 2015 Nature Publishing Group ;Copyright Nature Publishing Group Nov 2015 ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/nrg3933 ;PMID: 26442640

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12
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
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Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

Bioinformatics (Oxford, England), 2016-07, Vol.32 (14), p.2103-2110 [Peer Reviewed Journal]

The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2016 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btw152 ;PMID: 27153593

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13
Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA
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Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA

Nature genetics, 2017-04, Vol.49 (4), p.635-642 [Peer Reviewed Journal]

COPYRIGHT 2017 Nature Publishing Group ;COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group Apr 2017 ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/ng.3805 ;PMID: 28263317

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14
An open approach to systematically prioritize causal variants and genes at all published human GWAS trait-associated loci
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An open approach to systematically prioritize causal variants and genes at all published human GWAS trait-associated loci

Nature genetics, 2021-11, Vol.53 (11), p.1527-1533 [Peer Reviewed Journal]

2021. Crown. ;COPYRIGHT 2021 Nature Publishing Group ;Copyright Nature Publishing Group Nov 2021 ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/s41588-021-00945-5 ;PMID: 34711957

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15
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005595-e1005595 [Peer Reviewed Journal]

COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Wick RR, Judd LM, Gorrie CL, Holt KE (2017) Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol 13(6): e1005595. https://doi.org/10.1371/journal.pcbi.1005595 ;2017 Wick et al 2017 Wick et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Wick RR, Judd LM, Gorrie CL, Holt KE (2017) Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol 13(6): e1005595. https://doi.org/10.1371/journal.pcbi.1005595 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005595 ;PMID: 28594827

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16
A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
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A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens

Cell, 2019-01, Vol.176 (1-2), p.377-390.e19 [Peer Reviewed Journal]

2018 Elsevier Inc. ;Copyright © 2018 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2018.11.029 ;PMID: 30612741

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17
Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication
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Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication

Nature genetics, 2017-04, Vol.49 (4), p.579-587 [Peer Reviewed Journal]

COPYRIGHT 2017 Nature Publishing Group ;COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group Apr 2017 ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/ng.3807 ;PMID: 28263319

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18
CRISPR-Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome
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CRISPR-Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome

Nature biotechnology, 2017-06, Vol.35 (6), p.561-568 [Peer Reviewed Journal]

COPYRIGHT 2017 Nature Publishing Group ;COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group Jun 2017 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/nbt.3853 ;PMID: 28369033

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19
Transcriptome-wide Mapping of Internal N 7 -Methylguanosine Methylome in Mammalian mRNA
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Transcriptome-wide Mapping of Internal N 7 -Methylguanosine Methylome in Mammalian mRNA

Molecular cell, 2019-06, Vol.74 (6), p.1304 [Peer Reviewed Journal]

Copyright © 2019 Elsevier Inc. All rights reserved. ;EISSN: 1097-4164 ;DOI: 10.1016/j.molcel.2019.03.036 ;PMID: 31031084

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20
RedoxiBase: A database for ROS homeostasis regulated proteins
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RedoxiBase: A database for ROS homeostasis regulated proteins

Redox biology, 2019-09, Vol.26, p.101247-101247, Article 101247 [Peer Reviewed Journal]

Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved. ;Attribution - NonCommercial ;2019 The Authors. Published by Elsevier B.V. 2019 ;ISSN: 2213-2317 ;EISSN: 2213-2317 ;DOI: 10.1016/j.redox.2019.101247 ;PMID: 31228650

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