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Microbiome differential abundance methods produce different results across 38 datasetsNature communications, 2022-01, Vol.13 (1), p.342-342, Article 342 [Peer Reviewed Journal]2022. The Author(s). ;The Author(s) 2022. corrected publication 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022, corrected publication 2022 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-022-28034-z ;PMID: 35039521Full text available |
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1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analysesNature biotechnology, 2019-02, Vol.37 (2), p.179-185 [Peer Reviewed Journal]COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-018-0008-8 ;PMID: 30718868Full text available |
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Material Type: Article
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Microbial abundance, activity and population genomic profiling with mOTUs2Nature communications, 2019-03, Vol.10 (1), p.1014-1014, Article 1014 [Peer Reviewed Journal]This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Attribution ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-08844-4 ;PMID: 30833550Full text available |
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Material Type: Article
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Clustering huge protein sequence sets in linear timeNature communications, 2018-06, Vol.9 (1), p.2542-8, Article 2542 [Peer Reviewed Journal]2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-04964-5 ;PMID: 29959318Full text available |
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Material Type: Article
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The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata)Scientific reports, 2016-04, Vol.6 (1), p.24874-24874, Article 24874 [Peer Reviewed Journal]Copyright Nature Publishing Group Apr 2016 ;Copyright © 2016, Macmillan Publishers Limited 2016 Macmillan Publishers Limited ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/srep24874 ;PMID: 27126745Full text available |
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Material Type: Article
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Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated BarleyCell host & microbe, 2015-03, Vol.17 (3), p.392-403 [Peer Reviewed Journal]2015 The Authors ;Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved. ;2015 The Authors 2015 ;ISSN: 1931-3128 ;EISSN: 1934-6069 ;DOI: 10.1016/j.chom.2015.01.011 ;PMID: 25732064Full text available |
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Molecular evolution of Zika virus during its emergence in the 20(th) centuryPLoS neglected tropical diseases, 2014, Vol.8 (1), p.e2636-e2636 [Peer Reviewed Journal]ISSN: 1935-2727 ;EISSN: 1935-2735 ;DOI: 10.1371/journal.pntd.0002636 ;PMID: 24421913Full text available |
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8 |
Material Type: Article
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Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell SequencingCell, 2018-05, Vol.173 (4), p.879-893.e13 [Peer Reviewed Journal]2018 Elsevier Inc. ;Copyright © 2018 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;ISSN: 1097-4172 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2018.03.041 ;PMID: 29681456Full text available |
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Material Type: Article
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Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade GliomasThe New England journal of medicine, 2015-06, Vol.372 (26), p.2481-2498 [Peer Reviewed Journal]Copyright © 2015 Massachusetts Medical Society. All rights reserved. ;ISSN: 0028-4793 ;EISSN: 1533-4406 ;DOI: 10.1056/NEJMoa1402121 ;PMID: 26061751Full text available |
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10 |
Material Type: Article
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Differential abundance analysis for microbial marker-gene surveysNature methods, 2013-12, Vol.10 (12), p.1200-1202 [Peer Reviewed Journal]COPYRIGHT 2013 Nature Publishing Group ;Copyright Nature Publishing Group Dec 2013 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/NMETH.2658 ;PMID: 24076764Full text available |
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11 |
Material Type: Article
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Genomic analyses provide insights into the history of tomato breedingNature genetics, 2014-11, Vol.46 (11), p.1220-1226 [Peer Reviewed Journal]COPYRIGHT 2014 Nature Publishing Group ;COPYRIGHT 2014 Nature Publishing Group ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/ng.3117 ;PMID: 25305757Full text available |
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12 |
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Diversity and heritability of the maize rhizosphere microbiome under field conditionsProceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (16), p.6548-6553 [Peer Reviewed Journal]copyright © 1993-2008 National Academy of Sciences of the United States of America ;Copyright National Academy of Sciences Apr 16, 2013 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1302837110 ;PMID: 23576752Full text available |
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13 |
Material Type: Article
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A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicitiesThe ISME Journal, 2015-09, Vol.9 (9), p.1979-1990 [Peer Reviewed Journal]Copyright Nature Publishing Group Sep 2015 ;Copyright © 2015 International Society for Microbial Ecology 2015 International Society for Microbial Ecology ;ISSN: 1751-7362 ;EISSN: 1751-7370 ;DOI: 10.1038/ismej.2015.11 ;PMID: 25647347Full text available |
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14 |
Material Type: Article
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TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short readsNucleic acids research, 2017-07, Vol.45 (12), p.e111-e111 [Peer Reviewed Journal]The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. 2017 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkx257 ;PMID: 28402514Full text available |
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Material Type: Article
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The soil microbiome influences grapevine-associated microbiotamBio, 2015-03, Vol.6 (2) [Peer Reviewed Journal]Copyright © 2015 Zarraonaindia et al. ;Copyright © 2015 Zarraonaindia et al. 2015 Zarraonaindia et al. ;ISSN: 2161-2129 ;ISSN: 2150-7511 ;EISSN: 2150-7511 ;DOI: 10.1128/mbio.02527-14 ;PMID: 25805735Full text available |
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Material Type: Article
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Insect gut bacterial diversity determined by environmental habitat, diet, developmental stage, and phylogeny of hostApplied and Environmental Microbiology, 2014-09, Vol.80 (17), p.5254-5264 [Peer Reviewed Journal]Copyright © 2014, American Society for Microbiology. All Rights Reserved. ;Copyright © 2014, American Society for Microbiology. All Rights Reserved. 2014 American Society for Microbiology ;ISSN: 0099-2240 ;EISSN: 1098-5336 ;EISSN: 1098-6596 ;DOI: 10.1128/aem.01226-14 ;PMID: 24928884 ;CODEN: AEMIDFFull text available |
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Material Type: Article
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The Genome Portal of the Department of Energy Joint Genome InstituteNucleic acids research, 2012-01, Vol.40 (D1), p.D26-D32 [Peer Reviewed Journal]The Author(s) 2011. Published by Oxford University Press. 2011 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkr947 ;PMID: 22110030Full text available |
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18 |
Material Type: Article
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BayesHammer: Bayesian clustering for error correction in single-cell sequencingBMC genomics, 2013, Vol.14 Suppl 1 (Suppl 1), p.S7-S7 [Peer Reviewed Journal]2013 Nikolenko et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Copyright ©2013 Nikolenko et al.; licensee BioMed Central Ltd. 2013 Nikolenko et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/1471-2164-14-S1-S7 ;PMID: 23368723Full text available |
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Material Type: Article
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A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis melliferaNature genetics, 2014-10, Vol.46 (10), p.1081-1088 [Peer Reviewed Journal]Copyright Nature Publishing Group Oct 2014 ;ISSN: 1061-4036 ;ISSN: 1546-1718 ;EISSN: 1546-1718 ;DOI: 10.1038/ng.3077 ;PMID: 25151355Full text available |
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Material Type: Article
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Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary diseaseJournal of clinical microbiology, 2014-08, Vol.52 (8), p.2813-2823 [Peer Reviewed Journal]Copyright © 2014, American Society for Microbiology. All Rights Reserved. ;Copyright © 2014, American Society for Microbiology. All Rights Reserved. 2014 American Society for Microbiology ;ISSN: 0095-1137 ;EISSN: 1098-660X ;DOI: 10.1128/jcm.00035-14 ;PMID: 24850358Full text available |