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1
UniProt: the Universal Protein Knowledgebase in 2023
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UniProt: the Universal Protein Knowledgebase in 2023

Nucleic acids research, 2023-01, Vol.51 (D1), p.D523-D531 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2023 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac1052 ;PMID: 36408920

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2
CDD/SPARCLE: the conserved domain database in 2020
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CDD/SPARCLE: the conserved domain database in 2020

Nucleic acids research, 2020-01, Vol.48 (D1), p.D265-D268 [Peer Reviewed Journal]

Published by Oxford University Press on behalf of Nucleic Acids Research 2019. 2019 ;Published by Oxford University Press on behalf of Nucleic Acids Research 2019. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz991 ;PMID: 31777944

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3
InterPro in 2022
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InterPro in 2022

Nucleic acids research, 2023-01, Vol.51 (D1), p.D418-D427 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2023 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac993 ;PMID: 36350672

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4
The InterPro protein families and domains database: 20 years on
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The InterPro protein families and domains database: 20 years on

Nucleic Acids Research, 2021-01, Vol.49 (D1), p.D344-D354 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkaa977 ;PMID: 33156333

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5
A crowdsourcing open platform for literature curation in UniProt
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A crowdsourcing open platform for literature curation in UniProt

PLoS biology, 2021-12, Vol.19 (12), p.e3001464-e3001464 [Peer Reviewed Journal]

2021 Wang et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Wang et al 2021 Wang et al ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.3001464 ;PMID: 34871295

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6
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
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AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

Nucleic acids research, 2022-01, Vol.50 (D1), p.D439-D444 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab1061 ;PMID: 34791371

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7
What Are 3' UTRs Doing?
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What Are 3' UTRs Doing?

Cold Spring Harbor perspectives in biology, 2019-10, Vol.11 (10), p.a034728 [Peer Reviewed Journal]

Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved. ;Copyright Cold Spring Harbor Laboratory Press Oct 2019 ;2019 ;ISSN: 1943-0264 ;EISSN: 1943-0264 ;DOI: 10.1101/cshperspect.a034728 ;PMID: 30181377

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8
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences

Nucleic acids research, 2022-01, Vol.50 (D1), p.D543-D552 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab1038 ;PMID: 34723319

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9
COVID-19: Drug Targets and Potential Treatments
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Article
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COVID-19: Drug Targets and Potential Treatments

Journal of Medicinal Chemistry, 2020-11 [Peer Reviewed Journal]

2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://www.acs.org/content/acs/en/terms.html ;DOI: 10.1021/acs.jmedchem.0c00606

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10
KEGG as a reference resource for gene and protein annotation
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KEGG as a reference resource for gene and protein annotation

Nucleic acids research, 2016-01, Vol.44 (D1), p.D457-D462 [Peer Reviewed Journal]

The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkv1070 ;PMID: 26476454

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11
Sensitive protein alignments at tree-of-life scale using DIAMOND
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Sensitive protein alignments at tree-of-life scale using DIAMOND

Nature methods, 2021-04, Vol.18 (4), p.366-368 [Peer Reviewed Journal]

COPYRIGHT 2021 Nature Publishing Group ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-021-01101-x ;PMID: 33828273

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12
Dimers of DNA-PK create a stage for DNA double-strand break repair
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Article
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Dimers of DNA-PK create a stage for DNA double-strand break repair

Nature structural & molecular biology, 2021-01, Vol.28 (1), p.13-19 [Peer Reviewed Journal]

The Author(s), under exclusive licence to Springer Nature America, Inc. 2020. ;ISSN: 1545-9993 ;EISSN: 1545-9985 ;DOI: 10.1038/s41594-020-00517-x ;PMID: 33077952

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13
Active Site Flexibility as a Hallmark for Efficient PET Degradation by I. sakaiensis PETase
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Active Site Flexibility as a Hallmark for Efficient PET Degradation by I. sakaiensis PETase

Biophysical journal, 2018-03, Vol.114 (6), p.1302-1312 [Peer Reviewed Journal]

2018 Biophysical Society ;Copyright © 2018 Biophysical Society. Published by Elsevier Inc. All rights reserved. ;2018 Biophysical Society. 2018 Biophysical Society ;ISSN: 0006-3495 ;EISSN: 1542-0086 ;DOI: 10.1016/j.bpj.2018.02.005 ;PMID: 29590588

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14
CDD: NCBI's conserved domain database
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CDD: NCBI's conserved domain database

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D222-D226 [Peer Reviewed Journal]

Published by Oxford University Press on behalf of Nucleic Acids Research 2014. This work is written by US Government employees and is in the public domain in the US. ;Published by Oxford University Press on behalf of Nucleic Acids Research 2014. This work is written by US Government employees and is in the public domain in the US. 2015 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gku1221 ;PMID: 25414356

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15
Probable Pangolin Origin of SARS-CoV-2 Associated with the COVID-19 Outbreak
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Article
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Probable Pangolin Origin of SARS-CoV-2 Associated with the COVID-19 Outbreak

Current Biology, 2020-04, Vol.30 (7), p.1346-1351.e2 [Peer Reviewed Journal]

2020 Elsevier Inc. ;Copyright © 2020 Elsevier Inc. All rights reserved. ;2020. Not withstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://www.elsevier.com/legal/elsevier-website-terms-and-conditions ;2020 Elsevier Inc. 2020 Elsevier Inc. ;ISSN: 0960-9822 ;EISSN: 1879-0445 ;DOI: 10.1016/j.cub.2020.03.022 ;PMID: 32197085

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16
BRENDA in 2019: a European ELIXIR core data resource
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Article
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BRENDA in 2019: a European ELIXIR core data resource

Nucleic acids research, 2019-01, Vol.47 (D1), p.D542-D549 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gky1048 ;PMID: 30395242

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17
Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov
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Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov

International journal of systematic and evolutionary microbiology, 2016-12, Vol.66 (12), p.5575-5599 [Peer Reviewed Journal]

ISSN: 1466-5026 ;EISSN: 1466-5034 ;DOI: 10.1099/ijsem.0.001485 ;PMID: 27620848

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18
Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus
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Article
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Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus

Journal of virology, 2020-03, Vol.94 (7) [Peer Reviewed Journal]

Copyright © 2020 American Society for Microbiology. ;Copyright © 2020 American Society for Microbiology. 2020 American Society for Microbiology ;ISSN: 0022-538X ;EISSN: 1098-5514 ;DOI: 10.1128/jvi.00127-20 ;PMID: 31996437

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19
Unified rational protein engineering with sequence-based deep representation learning
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Unified rational protein engineering with sequence-based deep representation learning

Nature methods, 2019-12, Vol.16 (12), p.1315-1322 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Dec 2019 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-019-0598-1 ;PMID: 31636460

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20
I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction
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I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction

Nature protocols, 2022-10, Vol.17 (10), p.2326-2353 [Peer Reviewed Journal]

Springer Nature Limited 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/s41596-022-00728-0

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