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1
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
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MAFFT multiple sequence alignment software version 7: improvements in performance and usability

Molecular biology and evolution, 2013-04, Vol.30 (4), p.772-780 [Peer Reviewed Journal]

The Author 2013. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2013 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/mst010 ;PMID: 23329690

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2
Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
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Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites

Nucleic acids research, 2014-02, Vol.42 (4), p.2646-2659 [Peer Reviewed Journal]

The Author(s) 2013. Published by Oxford University Press. 2013 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkt1139 ;PMID: 24234441

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3
Protter: interactive protein feature visualization and integration with experimental proteomic data
Protter: interactive protein feature visualization and integration with experimental proteomic data
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Protter: interactive protein feature visualization and integration with experimental proteomic data

Bioinformatics, 2014-03, Vol.30 (6), p.884-886 [Peer Reviewed Journal]

ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btt607 ;PMID: 24162465

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4
Bayesian phylogenetics with BEAUti and the BEAST 1.7
Bayesian phylogenetics with BEAUti and the BEAST 1.7
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Bayesian phylogenetics with BEAUti and the BEAST 1.7

Molecular biology and evolution, 2012-08, Vol.29 (8), p.1969-1973 [Peer Reviewed Journal]

Copyright Oxford Publishing Limited(England) Aug 2012 ;The Author(s) 2012. Published by Oxford University Press on behalf of the 2012 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/mss075 ;PMID: 22367748

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5
Multiplex sequencing of pooled mitochondrial genomes-a crucial step toward biodiversity analysis using mito-metagenomics
Multiplex sequencing of pooled mitochondrial genomes-a crucial step toward biodiversity analysis using mito-metagenomics
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Multiplex sequencing of pooled mitochondrial genomes-a crucial step toward biodiversity analysis using mito-metagenomics

Nucleic acids research, 2014-12, Vol.42 (22), p.e166-e166 [Peer Reviewed Journal]

The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. 2014 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gku917 ;PMID: 25294837

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6
Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats
Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats
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Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

The ISME Journal, 2017-06, Vol.11 (6), p.1483-1499 [Peer Reviewed Journal]

Copyright Nature Publishing Group Jun 2017 ;Copyright © 2017 International Society for Microbial Ecology 2017 International Society for Microbial Ecology ;ISSN: 1751-7362 ;EISSN: 1751-7370 ;DOI: 10.1038/ismej.2016.198 ;PMID: 28106881

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7
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
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FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D690-D697 [Peer Reviewed Journal]

The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. 2015 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gku1099 ;PMID: 25398896

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8
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites
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CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites

Bioinformatics, 2015-04, Vol.31 (7), p.1120-1123 [Peer Reviewed Journal]

The Author 2014. Published by Oxford University Press. ;The Author 2014. Published by Oxford University Press. 2014 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btu743 ;PMID: 25414360

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9
Ecology of marine Bacteroidetes: a comparative genomics approach
Ecology of marine Bacteroidetes: a comparative genomics approach
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Ecology of marine Bacteroidetes: a comparative genomics approach

The ISME Journal, 2013-05, Vol.7 (5), p.1026-1037 [Peer Reviewed Journal]

Copyright Nature Publishing Group May 2013 ;Copyright © 2013 International Society for Microbial Ecology 2013 International Society for Microbial Ecology ;ISSN: 1751-7362 ;ISSN: 1751-7370 ;EISSN: 1751-7370 ;DOI: 10.1038/ismej.2012.169 ;PMID: 23303374

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10
γ-H2AX in recognition and signaling of DNA double-strand breaks in the context of chromatin
γ-H2AX in recognition and signaling of DNA double-strand breaks in the context of chromatin
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γ-H2AX in recognition and signaling of DNA double-strand breaks in the context of chromatin

Nucleic acids research, 2008-10, Vol.36 (17), p.5678-5694 [Peer Reviewed Journal]

2008 The Author(s) 2008 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkn550 ;PMID: 18772227

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11
GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database
GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database
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GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database

Nucleic acids research, 2012-01, Vol.40 (D1), p.D1211-D1215 [Peer Reviewed Journal]

The Author(s) 2011. Published by Oxford University Press. 2011 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkr1047 ;PMID: 22080561

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12
H1 histones: current perspectives and challenges
H1 histones: current perspectives and challenges
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H1 histones: current perspectives and challenges

Nucleic acids research, 2013-11, Vol.41 (21), p.9593-9609 [Peer Reviewed Journal]

The Author(s) 2013. Published by Oxford University Press. 2013 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkt700 ;PMID: 23945933

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13
The Pfam protein families database
The Pfam protein families database
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The Pfam protein families database

Nucleic acids research, 2010-01, Vol.38 (Database issue), p.D211-D222 [Peer Reviewed Journal]

The Author(s) 2009. Published by Oxford University Press. 2009 ;ISSN: 0305-1048 ;ISSN: 1362-4962 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkp985 ;PMID: 19920124

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14
Bayesian Inference of Species Networks from Multilocus Sequence Data
Bayesian Inference of Species Networks from Multilocus Sequence Data
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Bayesian Inference of Species Networks from Multilocus Sequence Data

Molecular biology and evolution, 2018-02, Vol.35 (2), p.504-517 [Peer Reviewed Journal]

The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. ;The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2017 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/msx307 ;PMID: 29220490

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15
Evidence for a core gut microbiota in the zebrafish
Evidence for a core gut microbiota in the zebrafish
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Evidence for a core gut microbiota in the zebrafish

The ISME Journal, 2011-10, Vol.5 (10), p.1595-1608 [Peer Reviewed Journal]

Copyright Nature Publishing Group Oct 2011 ;Copyright © 2011 International Society for Microbial Ecology 2011 International Society for Microbial Ecology ;ISSN: 1751-7362 ;EISSN: 1751-7370 ;DOI: 10.1038/ismej.2011.38 ;PMID: 21472014

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16
The genomic landscape of polymorphic human nuclear mitochondrial insertions
The genomic landscape of polymorphic human nuclear mitochondrial insertions
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The genomic landscape of polymorphic human nuclear mitochondrial insertions

Nucleic acids research, 2014-11, Vol.42 (20), p.12640-12649 [Peer Reviewed Journal]

The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. 2014 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gku1038 ;PMID: 25348406

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17
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
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Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

Nucleic acids research, 2011-07, Vol.39 (12), p.e82-e82 [Peer Reviewed Journal]

The Author(s) 2011. Published by Oxford University Press. 2011 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkr218 ;PMID: 21493687

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18
The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli
The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli
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The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

Nucleic acids research, 2011-11, Vol.39 (21), p.9275-9282 [Peer Reviewed Journal]

The Author(s) 2011. Published by Oxford University Press. 2011 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkr606 ;PMID: 21813460

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19
PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification
PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification
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PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification

Nucleic acids research, 2010-01, Vol.38 (Database issue), p.D792-D799 [Peer Reviewed Journal]

The Author(s) 2009. Published by Oxford University Press. 2009 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkp1005 ;PMID: 19906719

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20
The Sequence Alignment/Map format and SAMtools
The Sequence Alignment/Map format and SAMtools
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The Sequence Alignment/Map format and SAMtools

Bioinformatics, 2009-08, Vol.25 (16), p.2078-2079 [Peer Reviewed Journal]

2009 The Author(s) 2009 ;2009 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btp352 ;PMID: 19505943 ;CODEN: BOINFP

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