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Material Type: Article
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Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based modelsJournal of cheminformatics, 2021-02, Vol.13 (1), p.12-12, Article 12 [Peer Reviewed Journal]The Author(s) 2021 ;COPYRIGHT 2021 BioMed Central Ltd. ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00479-8 ;PMID: 33597034Full text available |
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2 |
Material Type: Article
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Cooler: scalable storage for Hi-C data and other genomically labeled arraysBioinformatics, 2020-01, Vol.36 (1), p.311-316 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz540 ;PMID: 31290943Full text available |
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3 |
Material Type: Article
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BBKNN: fast batch alignment of single cell transcriptomesBioinformatics, 2020-02, Vol.36 (3), p.964-965 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz625 ;PMID: 31400197Full text available |
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4 |
Material Type: Article
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New strategies to improve minimap2 alignment accuracyBioinformatics, 2021-12, Vol.37 (23), p.4572-4574 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab705 ;PMID: 34623391Full text available |
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5 |
Material Type: Article
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Scaling read aligners to hundreds of threads on general-purpose processorsBioinformatics, 2019-02, Vol.35 (3), p.421-432 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty648 ;PMID: 30020410Full text available |
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6 |
Material Type: Article
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MolTrans: Molecular Interaction Transformer for drug–target interaction predictionBioinformatics, 2021-05, Vol.37 (6), p.830-836 [Peer Reviewed Journal]The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa880 ;PMID: 33070179Full text available |
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7 |
Material Type: Article
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DeepDTA: deep drug-target binding affinity predictionBioinformatics, 2018-09, Vol.34 (17), p.i821-i829 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty593 ;PMID: 30423097Full text available |
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8 |
Material Type: Article
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Parallelization of MAFFT for large-scale multiple sequence alignmentsBioinformatics, 2018-07, Vol.34 (14), p.2490-2492 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty121 ;PMID: 29506019Full text available |
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9 |
Material Type: Article
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graphBioinformatics, 2015-05, Vol.31 (10), p.1674-1676 [Peer Reviewed Journal]The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btv033 ;PMID: 25609793Full text available |
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10 |
Material Type: Article
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A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq dataBioinformatics (Oxford, England), 2015-02, Vol.31 (4), p.587-589 [Peer Reviewed Journal]The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btu661 ;PMID: 25338718Full text available |
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11 |
Material Type: Article
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STREME: accurate and versatile sequence motif discoveryBioinformatics (Oxford, England), 2021-09, Vol.37 (18), p.2834-2840 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab203 ;PMID: 33760053Full text available |
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12 |
Material Type: Article
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YASARA View - molecular graphics for all devices - from smartphones to workstationsBioinformatics (Oxford, England), 2014-10, Vol.30 (20), p.2981-2982 [Peer Reviewed Journal]The Author 2014. Published by Oxford University Press. ;The Author 2014. Published by Oxford University Press. 2014 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btu426 ;PMID: 24996895Full text available |
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13 |
Material Type: Article
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ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimersBioinformatics (Oxford, England), 2014-06, Vol.30 (12), p.1771-1773 [Peer Reviewed Journal]The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2014 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btu097 ;PMID: 24532726Full text available |
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14 |
Material Type: Article
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Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte CarloBioinformatics (Oxford, England), 2017-06, Vol.33 (11), p.1630-1638 [Peer Reviewed Journal]The Author 2017. Published by Oxford University Press. ;The Author 2017. Published by Oxford University Press. 2017 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx025 ;PMID: 28108445Full text available |
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15 |
Material Type: Article
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MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasetsBioinformatics, 2016-02, Vol.32 (4), p.605-607 [Peer Reviewed Journal]The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btv638 ;PMID: 26515820Full text available |
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16 |
Material Type: Article
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Mosdepth: quick coverage calculation for genomes and exomesBioinformatics, 2018-03, Vol.34 (5), p.867-868 [Peer Reviewed Journal]The Author 2017. Published by Oxford University Press. 2017 ;The Author(s) 2017. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx699 ;PMID: 29096012Full text available |
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17 |
Material Type: Article
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Qualimap 2: advanced multi-sample quality control for high-throughput sequencing dataBioinformatics (Oxford, England), 2016-01, Vol.32 (2), p.292-294 [Peer Reviewed Journal]The Author 2015. Published by Oxford University Press. ;The Author 2015. Published by Oxford University Press. 2015 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btv566 ;PMID: 26428292Full text available |
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18 |
Material Type: Article
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featureCounts: an efficient general purpose program for assigning sequence reads to genomic featuresBioinformatics, 2014-04, Vol.30 (7), p.923-930 [Peer Reviewed Journal]ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btt656 ;PMID: 24227677Full text available |
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19 |
Material Type: Article
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plasmidSPAdes: assembling plasmids from whole genome sequencing dataBioinformatics (Oxford, England), 2016-11, Vol.32 (22), p.3380-3387 [Peer Reviewed Journal]The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btw493 ;PMID: 27466620Full text available |
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20 |
Material Type: Article
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Sambamba: fast processing of NGS alignment formatsBioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.2032-2034 [Peer Reviewed Journal]The Author 2015. Published by Oxford University Press. ;The Author 2015. Published by Oxford University Press. 2015 ;Wageningen University & Research ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btv098 ;PMID: 25697820Full text available |