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1
SAFPred: Synteny-aware gene function prediction for bacteria using protein embeddings
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SAFPred: Synteny-aware gene function prediction for bacteria using protein embeddings

Bioinformatics (Oxford, England), 2024-05, Vol.40 (6) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae328 ;PMID: 38775729

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2
Cystatin C and Seminal Parameter Evaluation in Patients with End-Stage Renal Disease
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Cystatin C and Seminal Parameter Evaluation in Patients with End-Stage Renal Disease

Current urology, 2020-12, Vol.14 (4), p.178-182 [Peer Reviewed Journal]

Copyright © 2020 by S. Karger AG, Basel. ;Copyright © 2020 by S. Karger AG, Basel 2020 ;ISSN: 1661-7649 ;EISSN: 1661-7657 ;DOI: 10.1159/000499241 ;PMID: 33488335

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3
Comparative Morphometry of the Wisconsin Miniature SwineTM Thoracic Spine for Modeling Human Spine in Translational Spinal Cord Injury Research
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Comparative Morphometry of the Wisconsin Miniature SwineTM Thoracic Spine for Modeling Human Spine in Translational Spinal Cord Injury Research

Annals of Neurosciences, 2019-04, Vol.25 (4), p.210-218 [Peer Reviewed Journal]

2018 S. Karger AG, Basel ;Copyright © 2018 by S. Karger AG, Basel 2018 ;ISSN: 0972-7531 ;EISSN: 0976-3260 ;DOI: 10.1159/000488022 ;PMID: 31000959

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4
Regional analysis to delineate intrasample heterogeneity with RegionalST
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Regional analysis to delineate intrasample heterogeneity with RegionalST

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae186 ;PMID: 38579257

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5
ISRES+: an improved evolutionary strategy for function minimization to estimate the free parameters of systems biology models
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ISRES+: an improved evolutionary strategy for function minimization to estimate the free parameters of systems biology models

Bioinformatics (Oxford, England), 2023-07, Vol.39 (7) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;The Author(s) 2023. Published by Oxford University Press. ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad403 ;PMID: 37354523

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6
GateMeClass: Gate Mining and Classification of cytometry data
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GateMeClass: Gate Mining and Classification of cytometry data

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae322 ;PMID: 38775676

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7
MUSE-XAE: MUtational Signature Extraction with eXplainable AutoEncoder enhances tumour types classification
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MUSE-XAE: MUtational Signature Extraction with eXplainable AutoEncoder enhances tumour types classification

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae320 ;PMID: 38754097

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8
Genotype sampling for deep-learning assisted experimental mapping of a combinatorially complete fitness landscape
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Genotype sampling for deep-learning assisted experimental mapping of a combinatorially complete fitness landscape

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae317 ;PMID: 38745436

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9
Prioritizing genomic variants through neuro-symbolic, knowledge-enhanced learning
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Prioritizing genomic variants through neuro-symbolic, knowledge-enhanced learning

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae301 ;PMID: 38696757

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10
Pathformer: a biological pathway informed transformer for disease diagnosis and prognosis using multi-omics data
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Pathformer: a biological pathway informed transformer for disease diagnosis and prognosis using multi-omics data

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae316 ;PMID: 38741230

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11
scPathoQuant: a tool for efficient alignment and quantification of pathogen sequence reads from 10× single cell sequencing datasets
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scPathoQuant: a tool for efficient alignment and quantification of pathogen sequence reads from 10× single cell sequencing datasets

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. 2024 ;The Author(s) 2024. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae145 ;PMID: 38478395

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12
Causal-ARG: a causality-guided framework for annotating properties of antibiotic resistance genes
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Causal-ARG: a causality-guided framework for annotating properties of antibiotic resistance genes

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae180 ;PMID: 38569882

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13
Ethereal and material gain: unanticipated opportunity with illness or disability
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Article
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Ethereal and material gain: unanticipated opportunity with illness or disability

Clinical medicine (London, England), 2014-02, Vol.14 (1), p.44-46 [Peer Reviewed Journal]

2014 Royal College of Physicians 2014 ;ISSN: 1470-2118 ;EISSN: 1473-4893 ;DOI: 10.7861/clinmedicine.14-1-44 ;PMID: 24532744 ;PMID: 44

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14
Annotation of biologically relevant ligands in UniProtKB using ChEBI
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Annotation of biologically relevant ligands in UniProtKB using ChEBI

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1) [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. 2022 ;The Author(s) 2022. Published by Oxford University Press. ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac793 ;PMID: 36484697

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15
Changes in Urolithiasis Referral Patterns for Shock Wave Lithotripsy over a Decade: Was There Adherence to AUA/EAU Guidelines?
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Changes in Urolithiasis Referral Patterns for Shock Wave Lithotripsy over a Decade: Was There Adherence to AUA/EAU Guidelines?

Current urology, 2015-09, Vol.8 (3), p.144-148 [Peer Reviewed Journal]

2015 S. Karger AG, Basel ;Copyright © 2014 by S. Karger AG, Basel 2014 ;ISSN: 1661-7649 ;EISSN: 1661-7657 ;DOI: 10.1159/000365706 ;PMID: 26889134

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16
Bayesian modelling of time series data (BayModTS)-a FAIR workflow to process sparse and highly variable data
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Article
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Bayesian modelling of time series data (BayModTS)-a FAIR workflow to process sparse and highly variable data

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae312 ;PMID: 38741151

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17
EpiSegMix: a flexible distribution hidden Markov model with duration modeling for chromatin state discovery
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Article
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EpiSegMix: a flexible distribution hidden Markov model with duration modeling for chromatin state discovery

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4) [Peer Reviewed Journal]

The Author(s) 2024. Published by Oxford University Press. ;The Author(s) 2024. Published by Oxford University Press. 2024 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btae178 ;PMID: 38565260

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18
Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis
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Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis

Bioinformatics, 2021-01, Vol.37 (14), p.2025-2032 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) (2021). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;2021. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab036 ;PMID: 33471060

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19
Predicting human microbe–drug associations via graph convolutional network with conditional random field
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Predicting human microbe–drug associations via graph convolutional network with conditional random field

Bioinformatics, 2020-12, Vol.36 (19), p.4918-4927 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;The Author(s) (2020). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa598 ;PMID: 32597948

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20
DeepRank-GNN: a graph neural network framework to learn patterns in protein–protein interfaces
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DeepRank-GNN: a graph neural network framework to learn patterns in protein–protein interfaces

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1) [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. 2022 ;The Author(s) 2022. Published by Oxford University Press. ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac759 ;PMID: 36420989

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