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Neural networks to learn protein sequence-function relationships from deep mutational scanning dataProceedings of the National Academy of Sciences - PNAS, 2021-11, Vol.118 (48) [Peer Reviewed Journal]Copyright © 2021 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences Nov 30, 2021 ;Copyright © 2021 the Author(s). Published by PNAS. 2021 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2104878118 ;PMID: 34815338Full text available |
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Material Type: Article
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UniProt: the Universal Protein Knowledgebase in 2023Nucleic acids research, 2023-01, Vol.51 (D1), p.D523-D531 [Peer Reviewed Journal]The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2023 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac1052 ;PMID: 36408920Full text available |
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Material Type: Article
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Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteinsProceedings of the National Academy of Sciences - PNAS, 2020-11, Vol.117 (46), p.28795-28805 [Peer Reviewed Journal]Copyright National Academy of Sciences Nov 17, 2020 ;2020 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2008122117 ;PMID: 33139563Full text available |
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Material Type: Article
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CDD/SPARCLE: the conserved domain database in 2020Nucleic acids research, 2020-01, Vol.48 (D1), p.D265-D268 [Peer Reviewed Journal]Published by Oxford University Press on behalf of Nucleic Acids Research 2019. 2019 ;Published by Oxford University Press on behalf of Nucleic Acids Research 2019. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz991 ;PMID: 31777944Digital Resources/Online E-Resources |
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Material Type: Article
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Protein sequence design with a learned potentialNature communications, 2022-02, Vol.13 (1), p.746-746, Article 746 [Peer Reviewed Journal]2022. The Author(s). ;The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-022-28313-9 ;PMID: 35136054Full text available |
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Material Type: Article
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InterPro in 2022Nucleic acids research, 2023-01, Vol.51 (D1), p.D418-D427 [Peer Reviewed Journal]The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2023 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac993 ;PMID: 36350672Full text available |
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Material Type: Article
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The InterPro protein families and domains database: 20 years onNucleic Acids Research, 2021-01, Vol.49 (D1), p.D344-D354 [Peer Reviewed Journal]The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkaa977 ;PMID: 33156333Digital Resources/Online E-Resources |
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8 |
Material Type: Article
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Fast and sensitive taxonomic classification for metagenomics with KaijuNature communications, 2016-04, Vol.7 (1), p.11257-11257, Article 11257 [Peer Reviewed Journal]Copyright Nature Publishing Group Apr 2016 ;Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2016 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/ncomms11257 ;PMID: 27071849Full text available |
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Material Type: Article
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ECNet is an evolutionary context-integrated deep learning framework for protein engineeringNature communications, 2021-09, Vol.12 (1), p.5743-14, Article 5743 [Peer Reviewed Journal]2021. The Author(s). ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-021-25976-8 ;PMID: 34593817Full text available |
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Material Type: Article
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Accurately clustering biological sequences in linear time by relatedness sortingNature communications, 2024-04, Vol.15 (1), p.3047-3047 [Peer Reviewed Journal]2024. The Author(s). ;The Author(s) 2024. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2024 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-024-47371-9 ;PMID: 38589369Full text available |
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11 |
Material Type: Article
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AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy modelsNucleic acids research, 2022-01, Vol.50 (D1), p.D439-D444 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab1061 ;PMID: 34791371Full text available |
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12 |
Material Type: Article
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AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequencesNucleic acids research, 2024-01, Vol.52 (D1), p.D368-D375 [Peer Reviewed Journal]The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. 2024 ;The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkad1011 ;PMID: 37933859Full text available |
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13 |
Material Type: Article
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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidencesNucleic acids research, 2022-01, Vol.50 (D1), p.D543-D552 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab1038 ;PMID: 34723319Full text available |
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Material Type: Article
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What Are 3' UTRs Doing?Cold Spring Harbor perspectives in biology, 2019-10, Vol.11 (10), p.a034728 [Peer Reviewed Journal]Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved. ;Copyright Cold Spring Harbor Laboratory Press Oct 2019 ;2019 ;ISSN: 1943-0264 ;EISSN: 1943-0264 ;DOI: 10.1101/cshperspect.a034728 ;PMID: 30181377Full text available |
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15 |
Material Type: Article
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COVID-19: Drug Targets and Potential TreatmentsJournal of Medicinal Chemistry, 2020-11 [Peer Reviewed Journal]2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://www.acs.org/content/acs/en/terms.html ;DOI: 10.1021/acs.jmedchem.0c00606Digital Resources/Online E-Resources |
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16 |
Material Type: Article
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ProtGPT2 is a deep unsupervised language model for protein designNature communications, 2022-07, Vol.13 (1), p.4348-4348, Article 4348 [Peer Reviewed Journal]The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-022-32007-7 ;PMID: 35896542Full text available |
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17 |
Material Type: Article
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MAFFT-DASH: integrated protein sequence and structural alignmentNucleic acids research, 2019-07, Vol.47 (W1), p.W5-W10 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz342 ;PMID: 31062021Full text available |
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Material Type: Article
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Publisher Correction: Thymosin α1 represents a potential potent single-molecule-based therapy for cystic fibrosisNature medicine, 2018-09, Vol.24 (9), p.1482-1482 [Peer Reviewed Journal]Copyright Nature Publishing Group Sep 2018 ;ISSN: 1078-8956 ;EISSN: 1546-170X ;DOI: 10.1038/s41591-018-0099-2 ;PMID: 29934535Full text available |
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19 |
Material Type: Article
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KEGG as a reference resource for gene and protein annotationNucleic acids research, 2016-01, Vol.44 (D1), p.D457-D462 [Peer Reviewed Journal]The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkv1070 ;PMID: 26476454Full text available |
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Material Type: Article
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AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulenceScientific reports, 2021-06, Vol.11 (1), p.12728-12728, Article 12728 [Peer Reviewed Journal]This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-021-91456-0 ;PMID: 34135355Full text available |