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A Hitchhiker's guide through the bio‐image analysis software universe

FEBS letters, 2022-10, Vol.596 (19), p.2472-2485 [Peer Reviewed Journal]

2022 The Authors. published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. ;Attribution ;ISSN: 0014-5793 ;ISSN: 1873-3468 ;EISSN: 1873-3468 ;DOI: 10.1002/1873-3468.14451 ;PMID: 35833863

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Title:
A Hitchhiker's guide through the bio‐image analysis software universe
Author: Haase, Robert ; Fazeli, Elnaz ; Legland, David ; Doube, Michael ; Culley, Siân ; Belevich, Ilya ; Jokitalo, Eija ; Schorb, Martin ; Klemm, Anna ; Tischer, Christian
Subjects: Bioengineering ; Bioinformatics ; bio‐image analysis ; Computer Science ; Computerized Image Processing ; Datoriserad bildbehandling ; Imaging ; Life Sciences ; Numerical Analysis ; open‐source ; software
Is Part Of: FEBS letters, 2022-10, Vol.596 (19), p.2472-2485
Description: Modern research in the life sciences is unthinkable without computational methods for extracting, quantifying and visualising information derived from microscopy imaging data of biological samples. In the past decade, we observed a dramatic increase in available software packages for these purposes. As it is increasingly difficult to keep track of the number of available image analysis platforms, tool collections, components and emerging technologies, we provide a conservative overview of software that we use in daily routine and give insights into emerging new tools. We give guidance on which aspects to consider when choosing the platform that best suits the user's needs, including aspects such as image data type, skills of the team, infrastructure and community at the institute and availability of time and budget. In this review, we provide a Hitchhiker's guide through the bio‐image analysis software universe for expert and non‐expert users.
Publisher: Wiley
Language: English
Identifier: ISSN: 0014-5793
ISSN: 1873-3468
EISSN: 1873-3468
DOI: 10.1002/1873-3468.14451
PMID: 35833863
Source: Hyper Article en Ligne (HAL) (Open Access)
GFMER Free Medical Journals
SWEPUB Freely available online

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A Hitchhiker's guide through the bio‐image analysis software universe

2022 The Authors. published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. ;Attribution ;ISSN: 0014-5793 ;ISSN: 1873-3468 ;EISSN: 1873-3468 ;DOI: 10.1002/1873-3468.14451 ;PMID: 35833863

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