skip to main content
Language:
Search Limited to: Search Limited to: Resource type Show Results with: Show Results with: Search type Index

High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water

G3 : genes - genomes - genetics, 2022-12, Vol.12 (12) [Peer Reviewed Journal]

Attribution ;ISSN: 2160-1836 ;EISSN: 2160-1836 ;DOI: 10.1093/g3journal/jkac282

Full text available

Citations Cited by
  • Title:
    High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water
  • Author: Jarrige, Domitille ; Haridas, Sajeet ; Bleykasten-Grosshans, Claudine ; Joly, Muriel ; Nadalig, Thierry ; Sancelme, Martine ; Vuilleumier, Stéphane ; Grigoriev, Igor ; Amato, Pierre ; Bringel, Françoise
  • Subjects: Environmental Sciences
  • Is Part Of: G3 : genes - genomes - genetics, 2022-12, Vol.12 (12)
  • Description: The genome of the basidiomycete yeast Dioszegia hungarica strain PDD-24b-2 isolated from cloud water at the summit of puy de Dôme (France) was sequenced using a hybrid PacBio and Illumina sequencing strategy. The obtained assembled genome of 20.98 Mb and a GC content of 57% is structured in 16 large-scale contigs ranging from 90 kb to 5.56 Mb, and another 27.2 kb contig representing the complete circular mitochondrial genome. In total, 8,234 proteins were predicted from the genome sequence. The mitochondrial genome shows 16.2% cgu codon usage for arginine but has no canonical cognate tRNA to translate this codon. Detected transposable element (TE)-related sequences account for about 0.63% of the assembled genome. A dataset of 2,068 hand-picked public environmental metagenomes, representing over 20 Tbp of raw reads, was probed for D. hungarica related ITS sequences, and revealed worldwide distribution of this species, particularly in aerial habitats. Growth experiments suggested a psychrophilic phenotype and the ability to disperse by producing ballistospores. The high-quality assembled genome obtained for this D. hungarica strain will help investigate the behavior and ecological functions of this species in the environment.
  • Publisher: Genetics Society of America
  • Language: English
  • Identifier: ISSN: 2160-1836
    EISSN: 2160-1836
    DOI: 10.1093/g3journal/jkac282
  • Source: Hyper Article en Ligne (HAL) (Open Access)
    GFMER Free Medical Journals
    PubMed Central
    ROAD: Directory of Open Access Scholarly Resources
    DOAJ Directory of Open Access Journals
Back to results list
INSPIRE LIBRARY - TON DUC THANG UNIVERSITY (84-028) 37 755 057 Feedback
19 Nguyen Huu Tho St. Dist.7, HCM thuvien@tdtu.edu.vn

Copyright © 2017 INSPIRE LIBRARY - TON DUC THANG UNIVERSITY

Searching Remote Databases, Please Wait