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Characterization of the complete chloroplast genome of Prosopis tamarugo (Prosopis, Leguminosae), an endangered endemic tree species from the Atacama Desert

Bosque (Valdivia, Chile), 2021, Vol.42 (3), p.365-370

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License. ;ISSN: 0717-9200 ;EISSN: 0717-9200 ;DOI: 10.4067/S0717-92002021000300365

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  • Title:
    Characterization of the complete chloroplast genome of Prosopis tamarugo (Prosopis, Leguminosae), an endangered endemic tree species from the Atacama Desert
  • Author: Contreras Díaz, Roberto ; van den Brink, Liesbeth ; Navarrete Fuentes, María José ; Arias Aburto, Mariana
  • Subjects: FORESTRY
  • Is Part Of: Bosque (Valdivia, Chile), 2021, Vol.42 (3), p.365-370
  • Description: Prosopis tamarugo (Prosopis, Sect. Strombocarpa) is an important endangered tree species from the Atacama Desert (Chile). However, this species requires urgent conservation measures, for which it is necessary to evaluate their genetic diversity. Here, we present the characterization of the complete chloroplast genome of P. tamarugo; the first complete chloroplast of a species from the Strombocarpa section, obtained by next generation sequencing (NGS) methods. The complete chloroplast contains 161,575 bp and a total of 129 genes. A phylogenetic analysis of four Prosopis plastomes revealed that P. tamarugo is a sister species of the other Prosopis species albeit having smaller chloroplast sequence compared to those of other Prosopis species. Nine DNAcp markers were detected to distinguish between haplotypes. Therefore, the chloroplast sequence of P. tamarugo could be highly valuable for upcoming phylogenetic studies.
  • Publisher: Universidad Austral de Chile, Facultad de Ciencias Forestales
  • Language: English;Portuguese
  • Identifier: ISSN: 0717-9200
    EISSN: 0717-9200
    DOI: 10.4067/S0717-92002021000300365
  • Source: SciELO
    Digital Library of the Commons

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