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The First Five Mitochondrial Genomes for the Family INidulariaceae/I Reveal Novel Gene Rearrangements, Intron Dynamics, and Phylogeny of IAgaricales/I

International journal of molecular sciences, 2023-08, Vol.24 (16) [Peer Reviewed Journal]

COPYRIGHT 2023 MDPI AG ;ISSN: 1422-0067 ;EISSN: 1422-0067 ;DOI: 10.3390/ijms241612599

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  • Title:
    The First Five Mitochondrial Genomes for the Family INidulariaceae/I Reveal Novel Gene Rearrangements, Intron Dynamics, and Phylogeny of IAgaricales/I
  • Author: Li, Zhao-chen ; Xie, Tian-chen ; Feng, Xi-long ; Wang, Zhen-xin ; Lin, Chao ; Li, Guo-ming ; Li, Xiu-Zhang ; Qi, Jianzhao
  • Subjects: Codon ; Genes ; Genomes ; Genomics ; Phylogeny ; Transfer RNA
  • Is Part Of: International journal of molecular sciences, 2023-08, Vol.24 (16)
  • Description: The family Nidulariaceae, consisting of five genera including Cyathus, is a unique group of mushrooms commonly referred to as bird’s nest fungi due to their striking resemblance to bird’s nests. These mushrooms are considered medicinal mushrooms in Chinese medicine and have received attention in recent years for their anti-neurodegenerative properties. However, despite the interest in these mushrooms, very little is known about their mitochondrial genomes (mitogenomes). This study is the first comprehensive investigation of the mitogenomes of five Nidulariaceae species with circular genome structures ranging in size from 114,236 bp to 129,263 bp. Comparative analyses based on gene content, gene length, tRNA, and codon usage indicate convergence within the family Nidulariaceae and heterogeneity within the order Agaricales. Phylogenetic analysis based on a combined mitochondrial conserved protein dataset provides a well-supported phylogenetic tree for the Basidiomycetes, which clearly demonstrates the evolutionary relationships between Nidulariaceae and other members of Agaricales. Furthermore, phylogenetic inferences based on four different gene sets reveal the stability and proximity of evolutionary relationships within Agaricales. These results reveal the uniqueness of the family Nidulariaceae and its similarity to other members of Agaricales; provide valuable insights into the origin, evolution, and genetics of Nidulariaceae species; and enrich the fungal mitogenome resource. This study will help to expand the knowledge and understanding of the mitogenomes in mushrooms.
  • Publisher: MDPI AG
  • Language: English
  • Identifier: ISSN: 1422-0067
    EISSN: 1422-0067
    DOI: 10.3390/ijms241612599
  • Source: PubMed Central
    ProQuest Central
    DOAJ Directory of Open Access Journals
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