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The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

Nucleic acids research, 2012-01, Vol.40 (D1), p.D1202-D1210 [Peer Reviewed Journal]

The Author(s) 2011. Published by Oxford University Press. 2011 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkr1090 ;PMID: 22140109

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Title:
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
Author: Lamesch, Philippe ; Berardini, Tanya Z ; Li, Donghui ; Swarbreck, David ; Wilks, Christopher ; Sasidharan, Rajkumar ; Muller, Robert ; Dreher, Kate ; Alexander, Debbie L ; Garcia-Hernandez, Margarita ; Karthikeyan, Athikkattuvalasu S ; Lee, Cynthia H ; Nelson, William D ; Ploetz, Larry ; Singh, Shanker ; Wensel, April ; Huala, Eva
Subjects: Arabidopsis - genetics ; Arabidopsis - metabolism ; Arabidopsis Proteins - genetics ; Arabidopsis thaliana ; Databases, Genetic ; Genes, Plant ; Genome, Plant ; Molecular Sequence Annotation ; Software
Is Part Of: Nucleic acids research, 2012-01, Vol.40 (D1), p.D1202-D1210
Description: The Arabidopsis Information Resource (TAIR, http://arabidopsis.org) is a genome database for Arabidopsis thaliana, an important reference organism for many fundamental aspects of biology as well as basic and applied plant biology research. TAIR serves as a central access point for Arabidopsis data, annotates gene function and expression patterns using controlled vocabulary terms, and maintains and updates the A. thaliana genome assembly and annotation. TAIR also provides researchers with an extensive set of visualization and analysis tools. Recent developments include several new genome releases (TAIR8, TAIR9 and TAIR10) in which the A. thaliana assembly was updated, pseudogenes and transposon genes were re-annotated, and new data from proteomics and next generation transcriptome sequencing were incorporated into gene models and splice variants. Other highlights include progress on functional annotation of the genome and the release of several new tools including Textpresso for Arabidopsis which provides the capability to carry out full text searches on a large body of research literature.
Publisher: England: Oxford University Press
Language: English
Identifier: ISSN: 0305-1048
EISSN: 1362-4962
DOI: 10.1093/nar/gkr1090
PMID: 22140109
Source: Oxford Journals Open Access Collection
DOAJ Directory of Open Access Journals
GFMER Free Medical Journals
MEDLINE
PubMed Central

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The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

The Author(s) 2011. Published by Oxford University Press. 2011 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkr1090 ;PMID: 22140109

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