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n-cutting site of DNA splicing language for single string and palindromic rule

Journal of physics. Conference series, 2022-01, Vol.2157 (1), p.12033 [Peer Reviewed Journal]

Published under licence by IOP Publishing Ltd ;Published under licence by IOP Publishing Ltd. This work is published under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1742-6588 ;EISSN: 1742-6596 ;DOI: 10.1088/1742-6596/2157/1/012033

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  • Title:
    n-cutting site of DNA splicing language for single string and palindromic rule
  • Author: Ruslim, N M ; Yusof, Y ; Adzhar, N
  • Subjects: Biological activity ; Context ; Languages ; Splicing ; Strings ; Theorems
  • Is Part Of: Journal of physics. Conference series, 2022-01, Vol.2157 (1), p.12033
  • Description: Abstract A new symbolization of Yusof-Goode (Y-G) splicing system was introduced by Yusof in 2012, is inspired by the framework of Formal Language Theory introduced by Head in 1987. Y-G splicing system is intended to present the biological process of DNA splicing in a translucent way. In this paper, starting with some relevant preliminaries, one theorem is proposed via Y-G approach using one initial string and one rule with different characteristics of the restriction enzyme. Additionally, the theorem showed the behavior of the splicing languages generated at single stage splicing. Two cases are considered in the theorem by conducting splicing using palindromic rule and palindromic recognition site with same left and right context for Case I and different left and right context for Case II. Furthermore, two molecular examples are discussed to validate two cases proposed in the theorem, which shows the real meaning of the theorem in biological aspect. From the proposed theorem, based on the splicing language generated, the type of splicing language can be determined. It is discovered that, the generated languages are in the form of limit and transient.
  • Publisher: Bristol: IOP Publishing
  • Language: English
  • Identifier: ISSN: 1742-6588
    EISSN: 1742-6596
    DOI: 10.1088/1742-6596/2157/1/012033
  • Source: Freely Accessible Journals
    Open Access: IOP Publishing Free Content
    AUTh Library subscriptions: ProQuest Central
    IOPscience (Open Access)
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