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Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

Nucleic acids research, 2021-05, Vol.49 (W1), p.W431-W437 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab314 ;PMID: 33956157

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  • Title:
    Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
  • Author: Sehnal, David ; Bittrich, Sebastian ; Deshpande, Mandar ; Svobodová, Radka ; Berka, Karel ; Bazgier, Václav ; Velankar, Sameer ; Burley, Stephen K ; Koča, Jaroslav ; Rose, Alexander S
  • Subjects: Web Server Issue
  • Is Part Of: Nucleic acids research, 2021-05, Vol.49 (W1), p.W431-W437
  • Description: Abstract Large biomolecular structures are being determined experimentally on a daily basis using established techniques such as crystallography and electron microscopy. In addition, emerging integrative or hybrid methods (I/HM) are producing structural models of huge macromolecular machines and assemblies, sometimes containing 100s of millions of non-hydrogen atoms. The performance requirements for visualization and analysis tools delivering these data are increasing rapidly. Significant progress in developing online, web-native three-dimensional (3D) visualization tools was previously accomplished with the introduction of the LiteMol suite and NGL Viewers. Thereafter, Mol* development was jointly initiated by PDBe and RCSB PDB to combine and build on the strengths of LiteMol (developed by PDBe) and NGL (developed by RCSB PDB). The web-native Mol* Viewer enables 3D visualization and streaming of macromolecular coordinate and experimental data, together with capabilities for displaying structure quality, functional, or biological context annotations. High-performance graphics and data management allows users to simultaneously visualise up to hundreds of (superimposed) protein structures, stream molecular dynamics simulation trajectories, render cell-level models, or display huge I/HM structures. It is the primary 3D structure viewer used by PDBe and RCSB PDB. It can be easily integrated into third-party services. Mol* Viewer is open source and freely available at https://molstar.org/. Graphical Abstract Graphical Abstract Overview of the large array of entities and systems that can be visualized and be manipulated with by the Mol* Viewer.
  • Publisher: England: Oxford University Press
  • Language: English
  • Identifier: ISSN: 0305-1048
    EISSN: 1362-4962
    DOI: 10.1093/nar/gkab314
    PMID: 33956157
  • Source: Oxford Journals Open Access Collection
    GFMER Free Medical Journals
    PubMed Central
    DOAJ Directory of Open Access Journals
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