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RNAInter in 2020: RNA interactome repository with increased coverage and annotation

Nucleic acids research, 2020-01, Vol.48 (D1), p.D189-D197 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz804 ;PMID: 31906603

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  • Title:
    RNAInter in 2020: RNA interactome repository with increased coverage and annotation
  • Author: Lin, Yunqing ; Liu, Tianyuan ; Cui, Tianyu ; Wang, Zhao ; Zhang, Yuncong ; Tan, Puwen ; Huang, Yan ; Yu, Jia ; Wang, Dong
  • Subjects: Animals ; Database Issue ; Databases, Nucleic Acid ; DNA - metabolism ; Humans ; Mice ; Molecular Sequence Annotation ; RNA - chemistry ; RNA - metabolism ; RNA-Binding Proteins - metabolism ; Software ; Spermatogenesis - genetics
  • Is Part Of: Nucleic acids research, 2020-01, Vol.48 (D1), p.D189-D197
  • Description: Abstract Research on RNA-associated interactions has exploded in recent years, and increasing numbers of studies are not limited to RNA–RNA and RNA–protein interactions but also include RNA–DNA/compound interactions. To facilitate the development of the interactome and promote understanding of the biological functions and molecular mechanisms of RNA, we updated RAID v2.0 to RNAInter (RNA Interactome Database), a repository for RNA-associated interactions that is freely accessible at http://www.rna-society.org/rnainter/ or http://www.rna-society.org/raid/. Compared to RAID v2.0, new features in RNAInter include (i) 8-fold more interaction data and 94 additional species; (ii) more definite annotations organized, including RNA editing/localization/modification/structure and homology interaction; (iii) advanced functions including fuzzy/batch search, interaction network and RNA dynamic expression and (iv) four embedded RNA interactome tools: RIscoper, IntaRNA, PRIdictor and DeepBind. Consequently, RNAInter contains >41 million RNA-associated interaction entries, involving more than 450 thousand unique molecules, including RNA, protein, DNA and compound. Overall, RNAInter provides a comprehensive RNA interactome resource for researchers and paves the way to investigate the regulatory landscape of cellular RNAs.
  • Publisher: England: Oxford University Press
  • Language: English
  • Identifier: ISSN: 0305-1048
    EISSN: 1362-4962
    DOI: 10.1093/nar/gkz804
    PMID: 31906603
  • Source: Oxford Journals Open Access Collection
    GFMER Free Medical Journals
    MEDLINE
    PubMed Central
    DOAJ Directory of Open Access Journals
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